Annotation Detail for C3orf15
Basic Information Top
| Gene Symbol: | C3orf15 ( AAT1,AAT1alpha,DKFZp781A2221 ) |
|---|---|
| Gene Full Name: | chromosome 3 open reading frame 15 |
| Band: | 3q12-q13.3 |
| Quick Links | Entrez ID:89876; OMIM: 609910; Uniprot ID:AAT1_HUMAN; ENSEMBL ID: ENSG00000183833; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.341906
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 10 / 564012 | 17 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 14 / 1939121 | 7 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 44 / 3360307 | 13 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 8 / 1100989 | 7 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 |  |
| ovary | 3 / 102051 | 29 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 30 / 330442 | 90 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P230649
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.77 ± 0.8 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.4 ± 0.45 | |
| Basal Part of Pons | 3.25 ± 0.53 | |
| Cerebellar Cortex | 3.44 ± 0.62 | |
| Cerebellar Nuclei | 3.47 ± 0.71 | |
| Claustrum | 3.83 ± 0.58 | |
| Epithalamus | 5.2 ± 0.94 | |
| Frontal Lobe | 3.46 ± 0.7 | |
| Globus Pallidus | 2.96 ± 0.61 | |
| Hypothalamus | 3.51 ± 0.61 | |
| Insula | 3.61 ± 0.41 | |
| Limbic Lobe | 3.57 ± 0.6 | |
| Mesencephalon | 3.76 ± 0.64 | |
| Myelencephalon | 3.58 ± 0.72 | |
| Occipital Lobe | 3.72 ± 0.93 | |
| Parietal Lobe | 3.49 ± 0.63 | |
| Pontine Tegmentum | 3.55 ± 0.69 | |
| Striatum | 3.89 ± 0.9 | |
| Subthalamus | 3.42 ± 0.62 | |
| Temporal Lobe | 3.62 ± 0.7 | |
| Thalamus | 3.38 ± 0.57 | |
| White Matter | 2.85 ± 0.53 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4932425I24Rik | CB | Cerebellum | 25.3 | |
| 38.96 | | |||
| 4932425I24Rik | CTX | Cerebral cortex | 44.34 | |
| 38.64 | | |||
| 4932425I24Rik | HIP | Hippocampal region | 27.62 | |
| 36.75 | | |||
| 4932425I24Rik | HPF | Hippocampal formation | 28.23 | |
| 31.59 | | |||
| 4932425I24Rik | HY | Hypothalamus | 5.94 | |
| 5.65 | | |||
| 4932425I24Rik | LSX | Lateral septal complex | 14.28 | |
| 14.14 | | |||
| 4932425I24Rik | MB | Midbrain | 10.28 | |
| 11.41 | | |||
| 4932425I24Rik | MY | Medulla | 21.45 | |
| 29.74 | | |||
| 4932425I24Rik | OLF | Olfactory bulb | 32.06 | |
| 32.54 | | |||
| 4932425I24Rik | P | Pons | 14.73 | |
| 21.84 | | |||
| 4932425I24Rik | PAL | Pallidum | 12.6 | |
| 14.29 | | |||
| 4932425I24Rik | RHP | Retrohippocampal region | 29.68 | |
| 25.68 | | |||
| 4932425I24Rik | sAMY | Striatum-like amygdalar nuclei | 24.34 | |
| 19.02 | | |||
| 4932425I24Rik | STR | Striatum | 24.27 | |
| 21.35 | | |||
| 4932425I24Rik | STRd | Striatum dorsal region | 26.18 | |
| 22.18 | | |||
| 4932425I24Rik | STRv | Striatum ventral region | 21.21 | |
| 22.51 | | |||
| 4932425I24Rik | TH | Thalamus | 10.06 | |
| 12.09 | |