Annotation Detail for CCNF
Basic Information Top
| Gene Symbol: | CCNF ( FBX1,FBXO1 ) |
|---|---|
| Gene Full Name: | cyclin F |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:899; OMIM: 600227; Uniprot ID:CCNF_HUMAN; ENSEMBL ID: ENSG00000162063; HGNC ID: 1591 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.1973
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 8 / 564012 | 14 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 26 / 1939121 | 13 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 54 / 3360307 | 16 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 5 / 46356 | 107 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 14 / 1100989 | 12 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 7 / 336974 | 20 | |
| lymph | 5 / 44270 | 112 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 5 / 330442 | 15 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204826_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 72.15 | |
| Adipocyte | 8.9 | |
| AdrenalCortex | 9.5 | |
| Adrenalgland | 5.65 | |
| Amygdala | 4.9 | |
| Appendix | 7.4 | |
| AtrioventricularNode | 13.45 | |
| BDCA4+_DentriticCells | 7.85 | |
| Bonemarrow | 19.3 | |
| BronchialEpithelialCells | 7 | |
| CD105+_Endothelial | 110.1 | |
| CD14+_Monocytes | 6.3 | |
| CD19+_BCells(neg._sel.) | 9.1 | |
| CD33+_Myeloid | 11.65 | |
| CD34+ | 28.1 | |
| CD4+_Tcells | 8.3 | |
| CD56+_NKCells | 13.25 | |
| CD71+_EarlyErythroid | 143.85 | |
| CD8+_Tcells | 7.05 | |
| CardiacMyocytes | 19.85 | |
| Caudatenucleus | 6.85 | |
| Cerebellum | 6.7 | |
| CerebellumPeduncles | 12.9 | |
| CiliaryGanglion | 9.3 | |
| CingulateCortex | 7.45 | |
| Colorectaladenocarcinoma | 7.25 | |
| DorsalRootGanglion | 5.6 | |
| FetalThyroid | 8.15 | |
| Fetalbrain | 8.9 | |
| Fetalliver | 15.65 | |
| Fetallung | 5.55 | |
| GlobusPallidus | 12.5 | |
| Heart | 8.65 | |
| Hypothalamus | 7.8 | |
| Kidney | 6.15 | |
| Leukemia_chronicMyelogenousK-562 | 18.65 | |
| Leukemia_promyelocytic-HL-60 | 8.15 | |
| Leukemialymphoblastic(MOLT-4) | 49.35 | |
| Liver | 8.6 | |
| Lung | 6.65 | |
| Lymphnode | 6.25 | |
| Lymphoma_burkitts(Daudi) | 18.75 | |
| Lymphoma_burkitts(Raji) | 10.15 | |
| MedullaOblongata | 7.25 | |
| OccipitalLobe | 6.4 | |
| OlfactoryBulb | 6.8 | |
| Ovary | 4.95 | |
| Pancreas | 6.8 | |
| PancreaticIslet | 9.6 | |
| ParietalLobe | 7.85 | |
| Pituitary | 8.55 | |
| Placenta | 7.2 | |
| Pons | 8.6 | |
| PrefrontalCortex | 7.95 | |
| Prostate | 6.7 | |
| Salivarygland | 5.9 | |
| SkeletalMuscle | 11.4 | |
| Skin | 5.8 | |
| SmoothMuscle | 7.35 | |
| Spinalcord | 8.45 | |
| SubthalamicNucleus | 7.65 | |
| SuperiorCervicalGanglion | 10.8 | |
| TemporalLobe | 13.6 | |
| Testis | 6.3 | |
| TestisGermCell | 5.9 | |
| TestisIntersitial | 5.7 | |
| TestisLeydigCell | 7.3 | |
| TestisSeminiferousTubule | 6.9 | |
| Thalamus | 7.45 | |
| Thymus | 15.1 | |
| Thyroid | 3.4 | |
| Tongue | 8.35 | |
| Tonsil | 8.65 | |
| Trachea | 5.7 | |
| TrigeminalGanglion | 12 | |
| Uterus | 4.15 | |
| UterusCorpus | 6.55 | |
| WholeBlood | 5.55 | |
| Wholebrain | 4.85 | |
| colon | 3.2 | |
| pineal_day | 9.4 | |
| pineal_night | 11.06 | |
| retina | 5.05 | |
| small_intestine | 2 | |
- Probe name: A_23_P37954
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.69 ± 0.81 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.03 ± 0.68 | |
| Basal Part of Pons | 3.42 ± 0.47 | |
| Cerebellar Cortex | 3.99 ± 0.43 | |
| Cerebellar Nuclei | 3.35 ± 0.59 | |
| Claustrum | 3.69 ± 0.52 | |
| Epithalamus | 3.01 ± 0.62 | |
| Frontal Lobe | 3.61 ± 0.48 | |
| Globus Pallidus | 2.44 ± 0.56 | |
| Hypothalamus | 3.49 ± 0.47 | |
| Insula | 3.6 ± 0.4 | |
| Limbic Lobe | 3.59 ± 0.59 | |
| Mesencephalon | 3.58 ± 0.58 | |
| Myelencephalon | 3.58 ± 0.62 | |
| Occipital Lobe | 3.37 ± 0.65 | |
| Parietal Lobe | 3.56 ± 0.59 | |
| Pontine Tegmentum | 3.47 ± 0.62 | |
| Striatum | 2.71 ± 0.71 | |
| Subthalamus | 3.52 ± 0.13 | |
| Temporal Lobe | 3.74 ± 0.49 | |
| Thalamus | 3.57 ± 0.56 | |
| White Matter | 2.94 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccnf | CB | Cerebellum | 11.45 | |
| 11.32 | | |||
| Ccnf | CTX | Cerebral cortex | 15.86 | |
| 10.8 | | |||
| Ccnf | HIP | Hippocampal region | 14.38 | |
| 12.86 | | |||
| Ccnf | HPF | Hippocampal formation | 13.1 | |
| 10.74 | | |||
| Ccnf | HY | Hypothalamus | 10.9 | |
| 7.79 | | |||
| Ccnf | LSX | Lateral septal complex | 9.05 | |
| 8.11 | | |||
| Ccnf | MB | Midbrain | 2.44 | |
| 2.23 | | |||
| Ccnf | MY | Medulla | 3.87 | |
| 3.44 | | |||
| Ccnf | OLF | Olfactory bulb | 28.63 | |
| 21.4 | | |||
| Ccnf | P | Pons | 3.38 | |
| 3.24 | | |||
| Ccnf | PAL | Pallidum | 7.8 | |
| 6.1 | | |||
| Ccnf | RHP | Retrohippocampal region | 11.31 | |
| 8.04 | | |||
| Ccnf | sAMY | Striatum-like amygdalar nuclei | 6.74 | |
| 4.13 | | |||
| Ccnf | STR | Striatum | 6.9 | |
| 5.32 | | |||
| Ccnf | STRd | Striatum dorsal region | 4.34 | |
| 3.31 | | |||
| Ccnf | STRv | Striatum ventral region | 17.47 | |
| 13.22 | | |||
| Ccnf | TH | Thalamus | 5.47 | |
| 4.06 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CCNF_HUMAN_507 | 10 | 507 | 516 | QVSLTAVKQR | PRIDE |