AutismKB 2.0

Annotation Detail for SELENBP1


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Basic Information Top
Gene Symbol:SELENBP1 ( FLJ13813,LPSB,SBP56,SP56,hSBP,hSP56 )
Gene Full Name: selenium binding protein 1
Band: 1q21.3
Quick LinksEntrez ID:8991; OMIM: 604188; Uniprot ID:SBP1_HUMAN; ENSEMBL ID: ENSG00000143416; HGNC ID: 10719
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus69 / 564012122
neonate5 / 31097160
infant0 / 236200 
juvenile1 / 5555617
adult280 / 1939121144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor19 / 94178201
cervical tumor5 / 34366145
chondrosarcoma5 / 8282360
colorectal tumor52 / 114246455
esophageal tumor0 / 172900 
gastrointestinal tumor9 / 11936975
germ cell tumor10 / 26384537
glioma1 / 1068839
head and neck tumor6 / 13630244
kidney tumor2 / 6895929
leukemia5 / 9584252
liver tumor17 / 96359176
lung tumor7 / 10312767
lymphoma0 / 717550 
non-neoplasia10 / 97250102
normal523 / 3360307155
ovarian tumor18 / 76682234
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS9 / 12568071
prostate cancer17 / 102680165
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor8 / 9025788
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue7 / 13106534
adrenal gland2 / 3319760
ascites3 / 4001574
bladder3 / 29757100
blood7 / 12347856
bone3 / 7165541
bone marrow3 / 4880161
brain86 / 110098978
cervix12 / 48171249
connective tissue9 / 14925560
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus3 / 20209148
eye20 / 21105494
heart23 / 89626256
intestine170 / 234472725
kidney22 / 211777103
larynx0 / 241450 
liver57 / 207743274
lung59 / 336974175
lymph0 / 442700 
lymph node0 / 916100 
mammary gland33 / 153271215
mouth2 / 6705229
muscle10 / 10771592
nerve1 / 1576863
ovary23 / 102051225
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx12 / 41328290
pituitary gland0 / 165850 
placenta31 / 280825110
prostate35 / 189345184
salivary gland2 / 2015599
skin3 / 21057414
spleen19 / 53952352
stomach15 / 96619155
testis18 / 33044254
thymus1 / 8113112
thyroid8 / 47473168
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord4 / 13680292
uterus25 / 232878107
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214433_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.2
Adipocyte176.6
AdrenalCortex7.85
Adrenalgland7.2
Amygdala17.65
Appendix9.2
AtrioventricularNode5.7
BDCA4+_DentriticCells7.1
Bonemarrow436.05
BronchialEpithelialCells6.45
CD105+_Endothelial797
CD14+_Monocytes6.95
CD19+_BCells(neg._sel.)7.55
CD33+_Myeloid9.2
CD34+78.2
CD4+_Tcells6.6
CD56+_NKCells9.55
CD71+_EarlyErythroid5220.35
CD8+_Tcells5.65
CardiacMyocytes8.85
Caudatenucleus14.3
Cerebellum6.4
CerebellumPeduncles8.5
CiliaryGanglion6.7
CingulateCortex11
Colorectaladenocarcinoma6.35
DorsalRootGanglion6.15
FetalThyroid397.2
Fetalbrain6.5
Fetalliver472.2
Fetallung355.25
GlobusPallidus5.9
Heart155.55
Hypothalamus33.55
Kidney149.5
Leukemia_chronicMyelogenousK-5627.8
Leukemia_promyelocytic-HL-606.25
Leukemialymphoblastic(MOLT-4)5.1
Liver437.6
Lung560.65
Lymphnode12.8
Lymphoma_burkitts(Daudi)9.25
Lymphoma_burkitts(Raji)10.7
MedullaOblongata7.7
OccipitalLobe11.8
OlfactoryBulb11
Ovary5.6
Pancreas41.1
PancreaticIslet40.5
ParietalLobe8.25
Pituitary9.05
Placenta7.8
Pons7.2
PrefrontalCortex26.55
Prostate66
Salivarygland6.75
SkeletalMuscle11.4
Skin7.3
SmoothMuscle8.5
Spinalcord33.1
SubthalamicNucleus7.8
SuperiorCervicalGanglion11.05
TemporalLobe7.1
Testis6.4
TestisGermCell6.45
TestisIntersitial6.15
TestisLeydigCell7.35
TestisSeminiferousTubule5.5
Thalamus14.35
Thymus7.8
Thyroid672.15
Tongue28.45
Tonsil6.15
Trachea100.9
TrigeminalGanglion8.5
Uterus15.45
UterusCorpus17.3
WholeBlood7.35
Wholebrain29.15
colon972.6
pineal_day36.66
pineal_night56.06
retina233.3
small_intestine89.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P74619
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.13 ± 0.73
Basal Forebrain3 ± 0.44
Basal Part of Pons2.55 ± 0.71
Cerebellar Cortex2.2 ± 0.46
Cerebellar Nuclei2.7 ± 0.72
Claustrum2.76 ± 0.52
Epithalamus3.64 ± 0.34
Frontal Lobe2.75 ± 0.78
Globus Pallidus3.37 ± 0.42
Hypothalamus2.52 ± 0.83
Insula2.44 ± 0.56
Limbic Lobe2.74 ± 0.77
Mesencephalon2.9 ± 0.69
Myelencephalon2.85 ± 0.74
Occipital Lobe2.74 ± 0.81
Parietal Lobe2.77 ± 0.77
Pontine Tegmentum2.75 ± 0.76
Striatum3.52 ± 0.69
Subthalamus2.96 ± 0.37
Temporal Lobe2.83 ± 0.85
Thalamus2.97 ± 0.78
White Matter2.49 ± 0.42
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001021 16 5 20 CGNCGPGYSTPLEAMK Peptide Atlas
SBP1_HUMAN_2 22 2 23 ATKCGNCGPGYSTPLEAMKGPR PRIDE
SBP1_HUMAN_345 13 345 357 LTGQLFLGGSIVK PRIDE
SBP1_HUMAN_358 13 358 370 GGPVQVLEDEELK PRIDE
SBP1_HUMAN_383 15 383 397 VAGGPQMIQLSLDGK PRIDE
SBP1_HUMAN_53 10 53 62 SPQYCQVIHR PRIDE
SBP1_HUMAN_94 10 94 103 LVLPSLISSR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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