Annotation Detail for C9orf140
Basic Information Top
| Gene Symbol: | C9orf140 ( p42.3 ) |
|---|---|
| Gene Full Name: | chromosome 9 open reading frame 140 |
| Band: | 9q34.3 |
| Quick Links | Entrez ID:89958; OMIM: 612057; Uniprot ID:CI140_HUMAN; ENSEMBL ID: ENSG00000186193; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.19322
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 6 / 62319 | 96 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 3 / 55556 | 53 | |
| adult | 38 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 13 / 114246 | 113 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 16 / 106883 | 149 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 16 / 103127 | 155 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 50 / 3360307 | 14 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 23 / 125680 | 183 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 6 / 46356 | 129 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 14 / 125191 | 111 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 7 / 123478 | 56 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 34 / 1100989 | 30 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 0 / 89626 | 0 | |
| intestine | 20 / 234472 | 85 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 17 / 336974 | 50 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 8 / 107715 | 74 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 17 / 189345 | 89 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P100517
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.07 ± 0.46 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.48 ± 0.28 | |
| Basal Part of Pons | 4.79 ± 0.57 | |
| Cerebellar Cortex | 4.43 ± 0.5 | |
| Cerebellar Nuclei | 5.12 ± 0.37 | |
| Claustrum | 3.99 ± 0.9 | |
| Epithalamus | 4.44 ± 0.95 | |
| Frontal Lobe | 5.01 ± 0.63 | |
| Globus Pallidus | 5.61 ± 0.44 | |
| Hypothalamus | 4.59 ± 0.54 | |
| Insula | 5.08 ± 0.6 | |
| Limbic Lobe | 4.9 ± 0.67 | |
| Mesencephalon | 5.35 ± 0.6 | |
| Myelencephalon | 5.12 ± 0.65 | |
| Occipital Lobe | 5.01 ± 0.75 | |
| Parietal Lobe | 5.02 ± 0.63 | |
| Pontine Tegmentum | 5.16 ± 0.58 | |
| Striatum | 5.28 ± 0.55 | |
| Subthalamus | 5.11 ± 0.74 | |
| Temporal Lobe | 5.57 ± 0.48 | |
| Thalamus | 5.38 ± 0.58 | |
| White Matter | 5.79 ± 0.46 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2010317E24Rik | CB | Cerebellum | 5.51 | |
| 6.13 | | |||
| 2010317E24Rik | CTX | Cerebral cortex | 2.72 | |
| 2.33 | | |||
| 2010317E24Rik | HIP | Hippocampal region | 1.43 | |
| 1.89 | | |||
| 2010317E24Rik | HPF | Hippocampal formation | 1.35 | |
| 1.61 | | |||
| 2010317E24Rik | HY | Hypothalamus | 1.34 | |
| 1.41 | | |||
| 2010317E24Rik | LSX | Lateral septal complex | 0.42 | |
| 0.27 | | |||
| 2010317E24Rik | MB | Midbrain | 1.02 | |
| 1.06 | | |||
| 2010317E24Rik | MY | Medulla | 2.7 | |
| 3.48 | | |||
| 2010317E24Rik | OLF | Olfactory bulb | 4.27 | |
| 4.45 | | |||
| 2010317E24Rik | P | Pons | 2.31 | |
| 2.96 | | |||
| 2010317E24Rik | PAL | Pallidum | 0.86 | |
| 0.93 | | |||
| 2010317E24Rik | RHP | Retrohippocampal region | 1.28 | |
| 1.28 | | |||
| 2010317E24Rik | sAMY | Striatum-like amygdalar nuclei | 0.56 | |
| 0.34 | | |||
| 2010317E24Rik | STR | Striatum | 1.01 | |
| 0.94 | | |||
| 2010317E24Rik | STRd | Striatum dorsal region | 0.86 | |
| 0.81 | | |||
| 2010317E24Rik | STRv | Striatum ventral region | 1.92 | |
| 1.71 | | |||
| 2010317E24Rik | TH | Thalamus | 1.73 | |
| 1.38 | |