AutismKB 2.0

Annotation Detail for TAF1C


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Basic Information Top
Gene Symbol:TAF1C ( MGC:39976,SL1,TAFI110,TAFI95 )
Gene Full Name: TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa
Band: 16q24
Quick LinksEntrez ID:9013; OMIM: 604905; Uniprot ID:TAF1C_HUMAN; ENSEMBL ID: ENSG00000103168; HGNC ID: 11534
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst7 / 62319112
fetus44 / 56401278
neonate1 / 3109732
infant0 / 236200 
juvenile2 / 5555635
adult116 / 193912159
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma2 / 17475114
breast (mammary gland) tumor3 / 9417831
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor21 / 26384579
glioma5 / 10688346
head and neck tumor1 / 1363027
kidney tumor3 / 6895943
leukemia18 / 95842187
liver tumor1 / 9635910
lung tumor4 / 10312738
lymphoma3 / 7175541
non-neoplasia2 / 9725020
normal254 / 336030775
ovarian tumor0 / 766820 
pancreatic tumor11 / 104616105
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma2 / 4635643
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder2 / 2975767
blood3 / 12347824
bone4 / 7165555
bone marrow6 / 48801122
brain119 / 1100989108
cervix8 / 48171166
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue22 / 215722101
esophagus0 / 202090 
eye12 / 21105456
heart3 / 8962633
intestine9 / 23447238
kidney6 / 21177728
larynx1 / 2414541
liver3 / 20774314
lung11 / 33697432
lymph3 / 4427067
lymph node13 / 91610141
mammary gland4 / 15327126
mouth2 / 6705229
muscle0 / 1077150 
nerve4 / 15768253
ovary2 / 10205119
pancreas12 / 21481255
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta16 / 28082556
prostate10 / 18934552
salivary gland0 / 201550 
skin6 / 21057428
spleen4 / 5395274
stomach1 / 9661910
testis34 / 330442102
thymus13 / 81131160
thyroid25 / 47473526
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus25 / 232878107
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203938_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts18.1
Adipocyte10.7
AdrenalCortex11.35
Adrenalgland9.15
Amygdala11.75
Appendix9.2
AtrioventricularNode8.05
BDCA4+_DentriticCells38.15
Bonemarrow7.75
BronchialEpithelialCells8.85
CD105+_Endothelial15.6
CD14+_Monocytes34.2
CD19+_BCells(neg._sel.)34.45
CD33+_Myeloid62.9
CD34+72.85
CD4+_Tcells61.75
CD56+_NKCells37.6
CD71+_EarlyErythroid7.9
CD8+_Tcells55.85
CardiacMyocytes8.5
Caudatenucleus14.55
Cerebellum8.85
CerebellumPeduncles12.4
CiliaryGanglion5.7
CingulateCortex13.25
Colorectaladenocarcinoma10.85
DorsalRootGanglion8.3
FetalThyroid10.75
Fetalbrain12.4
Fetalliver9.35
Fetallung11.9
GlobusPallidus8.8
Heart11.75
Hypothalamus14
Kidney8.65
Leukemia_chronicMyelogenousK-56212.95
Leukemia_promyelocytic-HL-6012.15
Leukemialymphoblastic(MOLT-4)20.4
Liver7.45
Lung17.6
Lymphnode21.05
Lymphoma_burkitts(Daudi)14.15
Lymphoma_burkitts(Raji)15.3
MedullaOblongata10.05
OccipitalLobe9.8
OlfactoryBulb13.55
Ovary7.2
Pancreas8.8
PancreaticIslet11.75
ParietalLobe11.45
Pituitary12.75
Placenta11.15
Pons10.35
PrefrontalCortex12.8
Prostate12.65
Salivarygland9.1
SkeletalMuscle14.45
Skin7.8
SmoothMuscle6.2
Spinalcord11.6
SubthalamicNucleus9.9
SuperiorCervicalGanglion11.95
TemporalLobe9.95
Testis9.3
TestisGermCell9.2
TestisIntersitial8.55
TestisLeydigCell10.8
TestisSeminiferousTubule9.4
Thalamus11.35
Thymus12.75
Thyroid17.35
Tongue10.65
Tonsil11.25
Trachea7.9
TrigeminalGanglion10.65
Uterus9.15
UterusCorpus9.75
WholeBlood9.8
Wholebrain8.3
colon7.55
pineal_day16.94
pineal_night16.74
retina13.225
small_intestine9.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P247055
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.96 ± 0.62
Basal Forebrain3.87 ± 0.27
Basal Part of Pons4.04 ± 0.47
Cerebellar Cortex4.09 ± 0.6
Cerebellar Nuclei3.95 ± 0.46
Claustrum3.71 ± 0.67
Epithalamus4.39 ± 0.6
Frontal Lobe3.97 ± 0.52
Globus Pallidus3.97 ± 0.64
Hypothalamus3.41 ± 0.46
Insula3.76 ± 0.54
Limbic Lobe3.88 ± 0.58
Mesencephalon3.85 ± 0.66
Myelencephalon3.97 ± 0.56
Occipital Lobe3.95 ± 0.55
Parietal Lobe3.89 ± 0.6
Pontine Tegmentum3.92 ± 0.59
Striatum4.22 ± 0.43
Subthalamus4.02 ± 0.66
Temporal Lobe3.97 ± 0.47
Thalamus4 ± 0.49
White Matter3.78 ± 0.19
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Taf1cCBCerebellum52.82
81.79
Taf1cCTXCerebral cortex24.05
16.08
Taf1cHIPHippocampal region20.33
22.17
Taf1cHPFHippocampal formation22.07
20.48
Taf1cHYHypothalamus4.66
3.64
Taf1cLSXLateral septal complex0.96
0.84
Taf1cMBMidbrain9.68
7.66
Taf1cMYMedulla24.27
23.49
Taf1cOLFOlfactory bulb23.79
19.14
Taf1cPPons14.9
13.77
Taf1cPALPallidum12.69
10.22
Taf1cRHPRetrohippocampal region25.07
18.22
Taf1csAMYStriatum-like amygdalar nuclei19.12
14.06
Taf1cSTRStriatum17.09
11.97
Taf1cSTRdStriatum dorsal region18.29
13.09
Taf1cSTRvStriatum ventral region15.49
9.53
Taf1cTHThalamus11.16
9.33
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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