Annotation Detail for TSPAN18
Basic Information Top
| Gene Symbol: | TSPAN18 ( FLJ14609,TSPAN ) |
|---|---|
| Gene Full Name: | tetraspanin 18 |
| Band: | 11p11.2 |
| Quick Links | Entrez ID:90139; OMIM: NA; Uniprot ID:TSN18_HUMAN; ENSEMBL ID: ENSG00000157570; HGNC ID: 20660 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.385634
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 54 / 564012 | 95 | |
| neonate | 3 / 31097 | 96 | |
| infant | 7 / 23620 | 296 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 73 / 1939121 | 37 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 28 / 263845 | 106 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 160 / 3360307 | 47 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 56 / 1100989 | 50 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 12 / 211054 | 56 | |
| heart | 9 / 89626 | 100 | |
| intestine | 12 / 234472 | 51 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 2 / 24145 | 82 | |
| liver | 0 / 207743 | 0 | |
| lung | 17 / 336974 | 50 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 22 / 330442 | 66 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 4 / 13680 | 292 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_13735_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.36 ± 1.34 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.11 ± 0.58 | |
| Basal Part of Pons | 2.72 ± 0.37 | |
| Cerebellar Cortex | 5.49 ± 0.55 | |
| Cerebellar Nuclei | 3.05 ± 0.81 | |
| Claustrum | 5.39 ± 1.79 | |
| Epithalamus | 3.92 ± 0.76 | |
| Frontal Lobe | 4.13 ± 1.2 | |
| Globus Pallidus | 3.48 ± 1.01 | |
| Hypothalamus | 3.95 ± 0.61 | |
| Insula | 3.98 ± 0.72 | |
| Limbic Lobe | 5.16 ± 1.74 | |
| Mesencephalon | 4.31 ± 0.77 | |
| Myelencephalon | 4.14 ± 1.36 | |
| Occipital Lobe | 3.46 ± 1.35 | |
| Parietal Lobe | 3.81 ± 1.11 | |
| Pontine Tegmentum | 4.34 ± 1.06 | |
| Striatum | 2.89 ± 0.88 | |
| Subthalamus | 2.66 ± 0.59 | |
| Temporal Lobe | 3.81 ± 0.97 | |
| Thalamus | 4.89 ± 0.83 | |
| White Matter | 5.05 ± 1.02 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tspan18 | CB | Cerebellum | 4.38 | |
| 5.85 | | |||
| Tspan18 | CTX | Cerebral cortex | 2.3 | |
| 2.28 | | |||
| Tspan18 | HIP | Hippocampal region | 28.33 | |
| 53.03 | | |||
| Tspan18 | HPF | Hippocampal formation | 19.38 | |
| 32.27 | | |||
| Tspan18 | HY | Hypothalamus | 5.03 | |
| 4.1 | | |||
| Tspan18 | LSX | Lateral septal complex | 1.1 | |
| 1.12 | | |||
| Tspan18 | MB | Midbrain | 3.13 | |
| 3.46 | | |||
| Tspan18 | MY | Medulla | 7.72 | |
| 9.08 | | |||
| Tspan18 | OLF | Olfactory bulb | 5.3 | |
| 4.75 | | |||
| Tspan18 | P | Pons | 5.39 | |
| 6.74 | | |||
| Tspan18 | PAL | Pallidum | 3.44 | |
| 3.76 | | |||
| Tspan18 | RHP | Retrohippocampal region | 5.43 | |
| 5.09 | | |||
| Tspan18 | sAMY | Striatum-like amygdalar nuclei | 1.12 | |
| 1.02 | | |||
| Tspan18 | STR | Striatum | 1.42 | |
| 1.32 | | |||
| Tspan18 | STRd | Striatum dorsal region | 1.01 | |
| 1.04 | | |||
| Tspan18 | STRv | Striatum ventral region | 3.42 | |
| 2.58 | | |||
| Tspan18 | TH | Thalamus | 3.45 | |
| 7.47 | |