Annotation Detail for SAMD1
Basic Information Top
| Gene Symbol: | SAMD1 ( - ) |
|---|---|
| Gene Full Name: | sterile alpha motif domain containing 1 |
| Band: | 19p13.12 |
| Quick Links | Entrez ID:90378; OMIM: NA; Uniprot ID:SAMD1_HUMAN; ENSEMBL ID: ; HGNC ID: 17958 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.140309
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 19 / 564012 | 33 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 42 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 8 / 114246 | 70 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 76 / 3360307 | 22 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 2 / 89626 | 22 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 2 / 24145 | 82 | |
| liver | 0 / 207743 | 0 | |
| lung | 6 / 336974 | 17 | |
| lymph | 6 / 44270 | 135 | |
| lymph node | 24 / 91610 | 261 |  |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 4 / 20155 | 198 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
- Probe name: A_23_P435941
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.16 ± 0.28 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.25 ± 0.41 | |
| Basal Part of Pons | 6.08 ± 0.38 | |
| Cerebellar Cortex | 6.01 ± 0.4 | |
| Cerebellar Nuclei | 6.28 ± 0.44 | |
| Claustrum | 6 ± 0.46 | |
| Epithalamus | 6.27 ± 0.47 | |
| Frontal Lobe | 6.07 ± 0.35 | |
| Globus Pallidus | 6.37 ± 0.39 | |
| Hypothalamus | 6.03 ± 0.28 | |
| Insula | 6.01 ± 0.45 | |
| Limbic Lobe | 6.15 ± 0.38 | |
| Mesencephalon | 6.14 ± 0.41 | |
| Myelencephalon | 6.21 ± 0.37 | |
| Occipital Lobe | 6.19 ± 0.33 | |
| Parietal Lobe | 6.14 ± 0.32 | |
| Pontine Tegmentum | 6.11 ± 0.35 | |
| Striatum | 6.47 ± 0.37 | |
| Subthalamus | 6.03 ± 0.16 | |
| Temporal Lobe | 6.16 ± 0.35 | |
| Thalamus | 6.08 ± 0.41 | |
| White Matter | 6.73 ± 0.23 | |
Mouse Brain ISH 