AutismKB 2.0

Annotation Detail for TMEM41A


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Basic Information Top
Gene Symbol:TMEM41A ( 2900010K02Rik,DKFZp686N06149,DKFZp686N107,MGC15397 )
Gene Full Name: transmembrane protein 41A
Band: 3q27.2
Quick LinksEntrez ID:90407; OMIM: NA; Uniprot ID:TM41A_HUMAN; ENSEMBL ID: ENSG00000163900; HGNC ID: 30544
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult4 / 19391212
embryoid body6 / 7076184
blastocyst0 / 623190 
fetus19 / 56401233
neonate0 / 310970 
infant2 / 2362084
juvenile1 / 5555617
adult59 / 193912130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal10 / 33603072
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
adrenal tumor2 / 12794156
bladder carcinoma3 / 17475171
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor2 / 17290115
gastrointestinal tumor1 / 1193698
germ cell tumor8 / 26384530
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor3 / 10312729
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal108 / 336030732
ovarian tumor8 / 76682104
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer5 / 10268048
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen1 / 5395218
stomach0 / 966190 
testis0 / 3304420 
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
adipose tissue1 / 1310676
adrenal gland5 / 33197150
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain17 / 110098915
cervix1 / 4817120
connective tissue3 / 14925520
ear2 / 16212123
embryonic tissue10 / 21572246
esophagus2 / 2020998
eye7 / 21105433
heart3 / 8962633
intestine9 / 23447238
kidney13 / 21177761
larynx1 / 2414541
liver2 / 2077439
lung11 / 33697432
lymph0 / 442700 
lymph node1 / 9161010
mammary gland5 / 15327132
mouth2 / 6705229
muscle3 / 10771527
nerve0 / 157680 
ovary10 / 10205197
pancreas1 / 2148124
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta13 / 28082546
prostate9 / 18934547
salivary gland0 / 201550 
skin6 / 21057428
spleen5 / 5395292
stomach1 / 9661910
testis9 / 33044227
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus8 / 23287834
vascular4 / 5178077
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P934510
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.42 ± 1
Basal Forebrain1.97 ± 0.2
Basal Part of Pons1.7 ± 0.38
Cerebellar Cortex1.92 ± 0.73
Cerebellar Nuclei2.28 ± 0.63
Claustrum2.87 ± 0.87
Epithalamus1.67 ± 0.66
Frontal Lobe1.83 ± 0.59
Globus Pallidus2.54 ± 0.31
Hypothalamus2.27 ± 0.87
Insula1.86 ± 0.48
Limbic Lobe2 ± 0.61
Mesencephalon2.18 ± 0.68
Myelencephalon2.03 ± 0.65
Occipital Lobe2.01 ± 0.54
Parietal Lobe2.08 ± 0.81
Pontine Tegmentum2.04 ± 0.63
Striatum2.16 ± 0.53
Subthalamus2.51 ± 0.12
Temporal Lobe1.88 ± 0.56
Thalamus2 ± 0.55
White Matter2.59 ± 0.37
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tmem41aCBCerebellum16.37
36.12
Tmem41aCTXCerebral cortex4.86
3.6
Tmem41aHIPHippocampal region6.95
6.84
Tmem41aHPFHippocampal formation5.41
4.9
Tmem41aHYHypothalamus2.13
1.76
Tmem41aLSXLateral septal complex1.48
1.48
Tmem41aMBMidbrain3.73
4.27
Tmem41aMYMedulla5.15
7.75
Tmem41aOLFOlfactory bulb3.81
3.27
Tmem41aPPons3.55
4.98
Tmem41aPALPallidum3.62
3.29
Tmem41aRHPRetrohippocampal region3.67
2.91
Tmem41asAMYStriatum-like amygdalar nuclei2.28
1.94
Tmem41aSTRStriatum6.71
4.71
Tmem41aSTRdStriatum dorsal region7.36
5.11
Tmem41aSTRvStriatum ventral region9.29
6.25
Tmem41aTHThalamus22.64
20.45
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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