AutismKB 2.0

Annotation Detail for IFT20


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Basic Information Top
Gene Symbol:IFT20 ( - )
Gene Full Name: intraflagellar transport 20 homolog (Chlamydomonas)
Band: 17q11.2
Quick LinksEntrez ID:90410; OMIM: NA; Uniprot ID:IFT20_HUMAN; ENSEMBL ID: ENSG00000109083; HGNC ID: 30989
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus26 / 56401246
neonate2 / 3109764
infant1 / 2362042
juvenile0 / 555560 
adult86 / 193912144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma7 / 8282384
colorectal tumor12 / 114246105
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor13 / 26384549
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor3 / 6895943
leukemia2 / 9584220
liver tumor4 / 9635941
lung tumor3 / 10312729
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal166 / 336030749
ovarian tumor7 / 7668291
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer1 / 1026809
retinoblastoma2 / 4635643
skin tumor1 / 1249498
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone5 / 7165569
bone marrow1 / 4880120
brain68 / 110098961
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye8 / 21105437
heart4 / 8962644
intestine16 / 23447268
kidney11 / 21177751
larynx1 / 2414541
liver6 / 20774328
lung17 / 33697450
lymph0 / 442700 
lymph node6 / 9161065
mammary gland5 / 15327132
mouth1 / 6705214
muscle4 / 10771537
nerve1 / 1576863
ovary7 / 10205168
pancreas14 / 21481265
parathyroid2 / 2053997
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta13 / 28082546
prostate4 / 18934521
salivary gland0 / 201550 
skin5 / 21057423
spleen5 / 5395292
stomach7 / 9661972
testis16 / 33044248
thymus4 / 8113149
thyroid0 / 474730 
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord2 / 13680146
uterus27 / 232878115
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210312_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts74.45
Adipocyte140.6
AdrenalCortex87.4
Adrenalgland70.05
Amygdala64.65
Appendix42.2
AtrioventricularNode13.4
BDCA4+_DentriticCells175.35
Bonemarrow64.7
BronchialEpithelialCells132.05
CD105+_Endothelial84.05
CD14+_Monocytes413
CD19+_BCells(neg._sel.)222.3
CD33+_Myeloid369.75
CD34+261.1
CD4+_Tcells157.2
CD56+_NKCells288.7
CD71+_EarlyErythroid57.9
CD8+_Tcells119.6
CardiacMyocytes93.45
Caudatenucleus58.45
Cerebellum54.25
CerebellumPeduncles64.65
CiliaryGanglion16.45
CingulateCortex119.85
Colorectaladenocarcinoma83.55
DorsalRootGanglion11.8
FetalThyroid155.05
Fetalbrain200.15
Fetalliver48.45
Fetallung145.7
GlobusPallidus25.65
Heart54.5
Hypothalamus122.45
Kidney57.6
Leukemia_chronicMyelogenousK-562175.75
Leukemia_promyelocytic-HL-6046.65
Leukemialymphoblastic(MOLT-4)121.1
Liver41.2
Lung105.3
Lymphnode110.6
Lymphoma_burkitts(Daudi)66.5
Lymphoma_burkitts(Raji)66.6
MedullaOblongata63
OccipitalLobe57.2
OlfactoryBulb88.9
Ovary40.3
Pancreas287.3
PancreaticIslet271.95
ParietalLobe40.75
Pituitary238.5
Placenta125.5
Pons56.15
PrefrontalCortex201.7
Prostate167.3
Salivarygland119
SkeletalMuscle53.35
Skin19.85
SmoothMuscle352.6
Spinalcord80.1
SubthalamicNucleus37.75
SuperiorCervicalGanglion39.4
TemporalLobe47.6
Testis205.7
TestisGermCell324.15
TestisIntersitial280.6
TestisLeydigCell201
TestisSeminiferousTubule336.7
Thalamus100.3
Thymus91.15
Thyroid329.2
Tongue36.3
Tonsil60.9
Trachea77.7
TrigeminalGanglion29.55
Uterus132.75
UterusCorpus56.9
WholeBlood179.8
Wholebrain92.6
colon44.3
pineal_day260.8
pineal_night245.62
retina143.65
small_intestine82.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_606_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.06 ± 0.35
Basal Forebrain8.81 ± 0.16
Basal Part of Pons8.34 ± 0.3
Cerebellar Cortex8.58 ± 0.34
Cerebellar Nuclei8.67 ± 0.29
Claustrum9.07 ± 0.43
Epithalamus9.13 ± 0.39
Frontal Lobe8.5 ± 0.35
Globus Pallidus9.2 ± 0.16
Hypothalamus8.59 ± 0.29
Insula8.51 ± 0.41
Limbic Lobe8.84 ± 0.39
Mesencephalon8.8 ± 0.35
Myelencephalon8.7 ± 0.4
Occipital Lobe9.04 ± 0.43
Parietal Lobe8.74 ± 0.36
Pontine Tegmentum8.72 ± 0.31
Striatum8.89 ± 0.37
Subthalamus8.52 ± 0.07
Temporal Lobe8.66 ± 0.34
Thalamus8.55 ± 0.27
White Matter9.38 ± 0.49
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ift20CBCerebellum17.55
22.11
Ift20CTXCerebral cortex21.55
16.6
Ift20HIPHippocampal region22.92
32.39
Ift20HPFHippocampal formation20.01
23.46
Ift20HYHypothalamus2.43
2.12
Ift20LSXLateral septal complex1.27
0.82
Ift20MBMidbrain5.37
5.31
Ift20MYMedulla9.04
10.65
Ift20OLFOlfactory bulb15.58
13.93
Ift20PPons4.98
5.93
Ift20PALPallidum3.92
3.92
Ift20RHPRetrohippocampal region16.23
13.06
Ift20sAMYStriatum-like amygdalar nuclei3.07
2.49
Ift20STRStriatum3.47
2.72
Ift20STRdStriatum dorsal region3.5
2.87
Ift20STRvStriatum ventral region4.1
2.68
Ift20THThalamus5.63
5.04
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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