AutismKB 2.0

Annotation Detail for SPAG9


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Basic Information Top
Gene Symbol:SPAG9 ( CT89,FLJ13450,FLJ14006,FLJ26141,FLJ34602,HLC-6,HLC4,JIP-4,JIP4,JLP,KIAA0516,MGC117291,MGC14967,MGC74461,PHET,PIG6 )
Gene Full Name: sperm associated antigen 9
Band: 17q21.33
Quick LinksEntrez ID:9043; OMIM: 605430; Uniprot ID:JIP4_HUMAN; ENSEMBL ID: ENSG00000008294; HGNC ID: 14524
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body9 / 70761127
blastocyst5 / 6231980
fetus91 / 564012161
neonate1 / 3109732
infant4 / 23620169
juvenile5 / 5555689
adult169 / 193912187
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma4 / 17475228
breast (mammary gland) tumor4 / 9417842
cervical tumor2 / 3436658
chondrosarcoma7 / 8282384
colorectal tumor8 / 11424670
esophageal tumor0 / 172900 
gastrointestinal tumor12 / 119369100
germ cell tumor17 / 26384564
glioma6 / 10688356
head and neck tumor12 / 13630288
kidney tumor7 / 68959101
leukemia3 / 9584231
liver tumor7 / 9635972
lung tumor7 / 10312767
lymphoma1 / 7175513
non-neoplasia15 / 97250154
normal408 / 3360307121
ovarian tumor0 / 766820 
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer4 / 10268038
retinoblastoma11 / 46356237
skin tumor11 / 12494988
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland4 / 33197120
ascites3 / 4001574
bladder6 / 29757201
blood4 / 12347832
bone9 / 71655125
bone marrow2 / 4880140
brain219 / 1100989198
cervix2 / 4817141
connective tissue9 / 14925560
ear4 / 16212246
embryonic tissue20 / 21572292
esophagus0 / 202090 
eye29 / 211054137
heart4 / 8962644
intestine10 / 23447242
kidney34 / 211777160
larynx1 / 2414541
liver13 / 20774362
lung21 / 33697462
lymph1 / 4427022
lymph node8 / 9161087
mammary gland11 / 15327171
mouth6 / 6705289
muscle7 / 10771564
nerve2 / 15768126
ovary0 / 1020510 
pancreas15 / 21481269
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta18 / 28082564
prostate6 / 18934531
salivary gland2 / 2015599
skin16 / 21057475
spleen0 / 539520 
stomach12 / 96619124
testis52 / 330442157
thymus6 / 8113173
thyroid5 / 47473105
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus23 / 23287898
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212468_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.9
Adipocyte7
AdrenalCortex8.3
Adrenalgland6.2
Amygdala32.6
Appendix7.95
AtrioventricularNode7.35
BDCA4+_DentriticCells8.8
Bonemarrow6.7
BronchialEpithelialCells6.7
CD105+_Endothelial10.4
CD14+_Monocytes7.8
CD19+_BCells(neg._sel.)8.75
CD33+_Myeloid12.7
CD34+11.65
CD4+_Tcells9.35
CD56+_NKCells10.9
CD71+_EarlyErythroid6.35
CD8+_Tcells7.65
CardiacMyocytes10.55
Caudatenucleus10
Cerebellum6.3
CerebellumPeduncles13.25
CiliaryGanglion5.9
CingulateCortex7.95
Colorectaladenocarcinoma7.1
DorsalRootGanglion6.4
FetalThyroid6.35
Fetalbrain12.85
Fetalliver6.25
Fetallung7.4
GlobusPallidus5.95
Heart10.3
Hypothalamus50.3
Kidney6.55
Leukemia_chronicMyelogenousK-5625.8
Leukemia_promyelocytic-HL-605.85
Leukemialymphoblastic(MOLT-4)5.3
Liver9.85
Lung14.5
Lymphnode5.45
Lymphoma_burkitts(Daudi)8.45
Lymphoma_burkitts(Raji)10.35
MedullaOblongata14.55
OccipitalLobe20.5
OlfactoryBulb12.3
Ovary4.4
Pancreas5.25
PancreaticIslet7.2
ParietalLobe25.25
Pituitary8.15
Placenta7
Pons7.3
PrefrontalCortex60.8
Prostate12
Salivarygland5.6
SkeletalMuscle9.05
Skin6.25
SmoothMuscle7.3
Spinalcord7.9
SubthalamicNucleus10.75
SuperiorCervicalGanglion8.85
TemporalLobe7
Testis6.1
TestisGermCell6
TestisIntersitial6.05
TestisLeydigCell7
TestisSeminiferousTubule6.1
Thalamus7.8
Thymus5.35
Thyroid18.15
Tongue7.8
Tonsil6.4
Trachea5.7
TrigeminalGanglion8.1
Uterus27.25
UterusCorpus7
WholeBlood8.4
Wholebrain8.35
colon10.2
pineal_day107.84
pineal_night70.28
retina11.15
small_intestine13
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P356041
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.46 ± 0.32
Basal Forebrain6.81 ± 0.11
Basal Part of Pons6.71 ± 0.39
Cerebellar Cortex6.7 ± 0.21
Cerebellar Nuclei6.79 ± 0.46
Claustrum6.08 ± 0.69
Epithalamus6.78 ± 0.67
Frontal Lobe6.5 ± 0.38
Globus Pallidus7.32 ± 0.4
Hypothalamus6.49 ± 0.33
Insula6.51 ± 0.26
Limbic Lobe6.32 ± 0.38
Mesencephalon6.49 ± 0.44
Myelencephalon6.55 ± 0.43
Occipital Lobe6.54 ± 0.33
Parietal Lobe6.63 ± 0.38
Pontine Tegmentum6.57 ± 0.43
Striatum6.46 ± 0.38
Subthalamus6.35 ± 0.77
Temporal Lobe6.48 ± 0.34
Thalamus6.69 ± 0.38
White Matter8.08 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Spag9CBCerebellum100
100
Spag9CTXCerebral cortex100
100
Spag9HIPHippocampal region100
100
Spag9HPFHippocampal formation100
100
Spag9HYHypothalamus100
100
Spag9LSXLateral septal complex100
100
Spag9MBMidbrain100
100
Spag9MYMedulla100
100
Spag9OLFOlfactory bulb100
100
Spag9PPons100
100
Spag9PALPallidum100
100
Spag9RHPRetrohippocampal region100
100
Spag9sAMYStriatum-like amygdalar nuclei100
100
Spag9STRStriatum100
100
Spag9STRdStriatum dorsal region100
100
Spag9STRvStriatum ventral region100
100
Spag9THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
JIP4_HUMAN_1 23 1 23 MELEDGVVYQEEPGGSGAVMSER PRIDE
PAp00005464 13 687 699 LWCAVGVNLSGGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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