AutismKB 2.0

Annotation Detail for CCNT2


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Basic Information Top
Gene Symbol:CCNT2 ( FLJ90560,MGC134840 )
Gene Full Name: cyclin T2
Band: 2q21.3
Quick LinksEntrez ID:905; OMIM: 603862; Uniprot ID:CCNT2_HUMAN; ENSEMBL ID: ENSG00000082258; HGNC ID: 1600
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult3 / 19391211
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal13 / 33603073
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain3 / 11009892
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214638_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts15.1
Adipocyte16.2
AdrenalCortex29.85
Adrenalgland15.25
Amygdala16.8
Appendix27.9
AtrioventricularNode17.4
BDCA4+_DentriticCells15.15
Bonemarrow20.1
BronchialEpithelialCells15.9
CD105+_Endothelial17.5
CD14+_Monocytes19.6
CD19+_BCells(neg._sel.)18
CD33+_Myeloid30.2
CD34+20
CD4+_Tcells22.95
CD56+_NKCells16.45
CD71+_EarlyErythroid16.3
CD8+_Tcells14
CardiacMyocytes26.05
Caudatenucleus14.45
Cerebellum13.55
CerebellumPeduncles21.25
CiliaryGanglion21.45
CingulateCortex17.6
Colorectaladenocarcinoma16.75
DorsalRootGanglion16.5
FetalThyroid19.55
Fetalbrain16.05
Fetalliver14.4
Fetallung11.8
GlobusPallidus13.45
Heart40.85
Hypothalamus17.3
Kidney17.25
Leukemia_chronicMyelogenousK-56214.8
Leukemia_promyelocytic-HL-6014.45
Leukemialymphoblastic(MOLT-4)13.25
Liver31.3
Lung18.05
Lymphnode12.9
Lymphoma_burkitts(Daudi)22.6
Lymphoma_burkitts(Raji)30.5
MedullaOblongata14.75
OccipitalLobe14.6
OlfactoryBulb12.5
Ovary13.8
Pancreas17.7
PancreaticIslet19.25
ParietalLobe19.95
Pituitary20.5
Placenta15.75
Pons16.9
PrefrontalCortex18.6
Prostate18.05
Salivarygland14.45
SkeletalMuscle32.35
Skin17.7
SmoothMuscle18.85
Spinalcord17.5
SubthalamicNucleus16.1
SuperiorCervicalGanglion31.85
TemporalLobe16
Testis14.1
TestisGermCell13.1
TestisIntersitial16.8
TestisLeydigCell21.45
TestisSeminiferousTubule14.55
Thalamus17.15
Thymus13.2
Thyroid18.6
Tongue28.8
Tonsil16.8
Trachea13.5
TrigeminalGanglion23.5
Uterus13.3
UterusCorpus17.55
WholeBlood17.85
Wholebrain13.15
colon16.6
pineal_day19.14
pineal_night17.66
retina19.475
small_intestine14.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P209316
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.69 ± 0.24
Basal Forebrain6.46 ± 0.15
Basal Part of Pons6.8 ± 0.21
Cerebellar Cortex6.87 ± 0.25
Cerebellar Nuclei6.52 ± 0.25
Claustrum6.85 ± 0.41
Epithalamus6.48 ± 0.18
Frontal Lobe6.51 ± 0.28
Globus Pallidus6.22 ± 0.22
Hypothalamus6.53 ± 0.41
Insula6.51 ± 0.35
Limbic Lobe6.72 ± 0.34
Mesencephalon6.53 ± 0.38
Myelencephalon6.58 ± 0.39
Occipital Lobe6.95 ± 0.27
Parietal Lobe6.65 ± 0.32
Pontine Tegmentum6.53 ± 0.32
Striatum6.37 ± 0.29
Subthalamus6.49 ± 0.05
Temporal Lobe6.6 ± 0.29
Thalamus6.65 ± 0.3
White Matter7.14 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ccnt2CBCerebellum100
100
Ccnt2CTXCerebral cortex100
100
Ccnt2HIPHippocampal region100
100
Ccnt2HPFHippocampal formation100
100
Ccnt2HYHypothalamus100
100
Ccnt2LSXLateral septal complex100
100
Ccnt2MBMidbrain100
100
Ccnt2MYMedulla100
100
Ccnt2OLFOlfactory bulb100
100
Ccnt2PPons100
100
Ccnt2PALPallidum100
100
Ccnt2RHPRetrohippocampal region100
100
Ccnt2sAMYStriatum-like amygdalar nuclei100
100
Ccnt2STRStriatum100
100
Ccnt2STRdStriatum dorsal region100
100
Ccnt2STRvStriatum ventral region100
100
Ccnt2THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00028303 16 106 121 VAHACLHPLEPLLDTK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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