Annotation Detail for SCRN2
Basic Information Top
| Gene Symbol: | SCRN2 ( Ses2 ) |
|---|---|
| Gene Full Name: | secernin 2 |
| Band: | 17q21 |
| Quick Links | Entrez ID:90507; OMIM: NA; Uniprot ID:SCRN2_HUMAN; ENSEMBL ID: ENSG00000141295; HGNC ID: 30381 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.239718
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 24 / 564012 | 42 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 80 / 1939121 | 41 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 10 / 95842 | 104 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 8 / 103127 | 77 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 121 / 3360307 | 36 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 19 / 125680 | 151 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 12 / 123478 | 97 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 31 / 1100989 | 28 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 2 / 89626 | 22 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 15 / 336974 | 44 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 16 / 280825 | 56 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 3 / 96619 | 31 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 8 / 47473 | 168 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P318593
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.13 ± 0.46 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.36 ± 0.38 | |
| Basal Part of Pons | 4.59 ± 0.47 | |
| Cerebellar Cortex | 4.61 ± 0.6 | |
| Cerebellar Nuclei | 4.08 ± 0.53 | |
| Claustrum | 3.62 ± 0.79 | |
| Epithalamus | 4.95 ± 0.8 | |
| Frontal Lobe | 4.43 ± 0.58 | |
| Globus Pallidus | 4.34 ± 0.46 | |
| Hypothalamus | 4.5 ± 0.68 | |
| Insula | 4.25 ± 0.48 | |
| Limbic Lobe | 4.22 ± 0.66 | |
| Mesencephalon | 4.26 ± 0.56 | |
| Myelencephalon | 4.38 ± 0.57 | |
| Occipital Lobe | 4.2 ± 0.53 | |
| Parietal Lobe | 4.34 ± 0.56 | |
| Pontine Tegmentum | 4.17 ± 0.61 | |
| Striatum | 4.46 ± 0.55 | |
| Subthalamus | 4.2 ± 0.95 | |
| Temporal Lobe | 4.3 ± 0.56 | |
| Thalamus | 4.36 ± 0.52 | |
| White Matter | 4.09 ± 0.67 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Scrn2 | CB | Cerebellum | 29.06 | |
| 38.35 | | |||
| Scrn2 | CTX | Cerebral cortex | 50.49 | |
| 36.64 | | |||
| Scrn2 | HIP | Hippocampal region | 22.77 | |
| 24.91 | | |||
| Scrn2 | HPF | Hippocampal formation | 22.81 | |
| 21.29 | | |||
| Scrn2 | HY | Hypothalamus | 27.91 | |
| 19.91 | | |||
| Scrn2 | LSX | Lateral septal complex | 15.93 | |
| 10.98 | | |||
| Scrn2 | MB | Midbrain | 27.37 | |
| 25.19 | | |||
| Scrn2 | MY | Medulla | 48.83 | |
| 48.07 | | |||
| Scrn2 | OLF | Olfactory bulb | 46 | |
| 34.05 | | |||
| Scrn2 | P | Pons | 41.49 | |
| 40.04 | | |||
| Scrn2 | PAL | Pallidum | 29.82 | |
| 24.63 | | |||
| Scrn2 | RHP | Retrohippocampal region | 22.68 | |
| 15.8 | | |||
| Scrn2 | sAMY | Striatum-like amygdalar nuclei | 28.57 | |
| 20.06 | | |||
| Scrn2 | STR | Striatum | 23.81 | |
| 16.9 | | |||
| Scrn2 | STRd | Striatum dorsal region | 20.06 | |
| 14.65 | | |||
| Scrn2 | STRv | Striatum ventral region | 36.77 | |
| 23.9 | | |||
| Scrn2 | TH | Thalamus | 33 | |
| 27.05 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00005230 | 13 | 57 | 69 | LQCTYIEVEQVSK | Peptide Atlas |