AutismKB 2.0

Annotation Detail for SLC13A2


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Basic Information Top
Gene Symbol:SLC13A2 ( NADC1,NaCT,NaDC-1,SDCT1 )
Gene Full Name: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
Band: 17q11.2
Quick LinksEntrez ID:9058; OMIM: 604148; Uniprot ID:S13A2_HUMAN; ENSEMBL ID: ENSG00000007216; HGNC ID: 10917
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult7 / 19391213
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal47 / 336030713
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma3 / 4635664
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain1 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine12 / 23447251
kidney33 / 211777155
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach2 / 9661920
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea10 / 52413190
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207567_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.75
Adipocyte8.45
AdrenalCortex10.95
Adrenalgland7.8
Amygdala8.1
Appendix8
AtrioventricularNode6.2
BDCA4+_DentriticCells6.25
Bonemarrow11.6
BronchialEpithelialCells7.65
CD105+_Endothelial7.95
CD14+_Monocytes8.35
CD19+_BCells(neg._sel.)8.3
CD33+_Myeloid8.95
CD34+9.65
CD4+_Tcells7.6
CD56+_NKCells9.05
CD71+_EarlyErythroid7.45
CD8+_Tcells5.75
CardiacMyocytes10
Caudatenucleus11.3
Cerebellum11.65
CerebellumPeduncles9.25
CiliaryGanglion5.8
CingulateCortex8.05
Colorectaladenocarcinoma6.25
DorsalRootGanglion6.3
FetalThyroid8.4
Fetalbrain7.8
Fetalliver8.05
Fetallung6.6
GlobusPallidus10
Heart11
Hypothalamus8.45
Kidney22.75
Leukemia_chronicMyelogenousK-5629.55
Leukemia_promyelocytic-HL-607.45
Leukemialymphoblastic(MOLT-4)6.35
Liver12.6
Lung8.6
Lymphnode6.8
Lymphoma_burkitts(Daudi)12.75
Lymphoma_burkitts(Raji)11.15
MedullaOblongata7.15
OccipitalLobe7.1
OlfactoryBulb6.25
Ovary5.2
Pancreas6.5
PancreaticIslet8.35
ParietalLobe8.6
Pituitary17.35
Placenta8.1
Pons8.8
PrefrontalCortex8.55
Prostate8.95
Salivarygland8.15
SkeletalMuscle13.1
Skin6
SmoothMuscle8.95
Spinalcord8.45
SubthalamicNucleus7.85
SuperiorCervicalGanglion9
TemporalLobe7.55
Testis6.8
TestisGermCell5.55
TestisIntersitial5.1
TestisLeydigCell7.9
TestisSeminiferousTubule8.95
Thalamus12.85
Thymus6.25
Thyroid8.65
Tongue8.05
Tonsil7.85
Trachea13.5
TrigeminalGanglion8.1
Uterus5.65
UterusCorpus7.3
WholeBlood6.55
Wholebrain6.35
colon7.95
pineal_day8.46
pineal_night7.66
retina8.9
small_intestine15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12590_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.15 ± 0.89
Basal Forebrain2.92 ± 0.48
Basal Part of Pons2.74 ± 0.68
Cerebellar Cortex2.55 ± 0.77
Cerebellar Nuclei2.95 ± 0.59
Claustrum3.51 ± 0.79
Epithalamus2.34 ± 0.75
Frontal Lobe2.8 ± 0.76
Globus Pallidus3.52 ± 0.56
Hypothalamus2.71 ± 0.45
Insula2.51 ± 0.76
Limbic Lobe2.97 ± 0.77
Mesencephalon2.99 ± 0.85
Myelencephalon2.94 ± 0.73
Occipital Lobe2.75 ± 1
Parietal Lobe2.95 ± 0.64
Pontine Tegmentum2.88 ± 0.7
Striatum2.95 ± 0.73
Subthalamus2.35 ± 0.13
Temporal Lobe2.79 ± 0.73
Thalamus2.8 ± 0.64
White Matter3.27 ± 0.6
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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