Annotation Detail for SYT7
Basic Information Top
| Gene Symbol: | SYT7 ( IPCA-7,MGC150517,PCANAP7,SYT-VII ) |
|---|---|
| Gene Full Name: | synaptotagmin VII |
| Band: | 11q12.2 |
| Quick Links | Entrez ID:9066; OMIM: 604146; Uniprot ID:SYT7_HUMAN; ENSEMBL ID: ENSG00000011347; HGNC ID: 11514 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.502730
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 79 / 1939121 | 40 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 1 / 263845 | 3 |  |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 113 / 3360307 | 33 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 8 / 102680 | 77 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 55 / 1100989 | 49 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 1 / 24145 | 41 | |
| liver | 6 / 207743 | 28 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 20 / 189345 | 105 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1631_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.4 ± 0.67 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.22 ± 0.36 | |
| Basal Part of Pons | 7.18 ± 0.43 | |
| Cerebellar Cortex | 6.93 ± 0.55 | |
| Cerebellar Nuclei | 6.15 ± 0.79 | |
| Claustrum | 8.34 ± 0.64 | |
| Epithalamus | 5.31 ± 1.02 | |
| Frontal Lobe | 6.77 ± 0.77 | |
| Globus Pallidus | 4.91 ± 0.72 | |
| Hypothalamus | 6.04 ± 0.6 | |
| Insula | 6.99 ± 0.56 | |
| Limbic Lobe | 7.45 ± 0.72 | |
| Mesencephalon | 6.49 ± 0.83 | |
| Myelencephalon | 6.83 ± 0.76 | |
| Occipital Lobe | 7.51 ± 0.78 | |
| Parietal Lobe | 7.05 ± 0.69 | |
| Pontine Tegmentum | 6.9 ± 0.79 | |
| Striatum | 6.79 ± 0.55 | |
| Subthalamus | 6.32 ± 0.05 | |
| Temporal Lobe | 7.05 ± 0.62 | |
| Thalamus | 7.24 ± 0.68 | |
| White Matter | 4.21 ± 0.81 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Syt7 | CB | Cerebellum | 16.85 | |
| 46.91 | | |||
| Syt7 | CTX | Cerebral cortex | 66.88 | |
| 54.35 | | |||
| Syt7 | HIP | Hippocampal region | 43.87 | |
| 78.93 | | |||
| Syt7 | HPF | Hippocampal formation | 37.63 | |
| 57.28 | | |||
| Syt7 | HY | Hypothalamus | 4.43 | |
| 3.5 | | |||
| Syt7 | LSX | Lateral septal complex | 40.1 | |
| 28.35 | | |||
| Syt7 | MB | Midbrain | 14.65 | |
| 13.65 | | |||
| Syt7 | MY | Medulla | 9.64 | |
| 12.59 | | |||
| Syt7 | OLF | Olfactory bulb | 59.78 | |
| 72.8 | | |||
| Syt7 | P | Pons | 13.25 | |
| 15.02 | | |||
| Syt7 | PAL | Pallidum | 6.67 | |
| 5.55 | | |||
| Syt7 | RHP | Retrohippocampal region | 25.33 | |
| 24.59 | | |||
| Syt7 | sAMY | Striatum-like amygdalar nuclei | 6.31 | |
| 4.58 | | |||
| Syt7 | STR | Striatum | 18.87 | |
| 12.39 | | |||
| Syt7 | STRd | Striatum dorsal region | 14.04 | |
| 9.1 | | |||
| Syt7 | STRv | Striatum ventral region | 30.13 | |
| 18.17 | | |||
| Syt7 | TH | Thalamus | 84.87 | |
| 81.93 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00042685 | 32 | 102 | 133 | SSVSDLVNSLTSEMLMLSPGSEEDEAHEGCSR | Peptide Atlas |