Annotation Detail for SPOCD1
Basic Information Top
| Gene Symbol: | SPOCD1 ( FLJ25348,FLJ39908 ) |
|---|---|
| Gene Full Name: | SPOC domain containing 1 |
| Band: | 1p35.2 |
| Quick Links | Entrez ID:90853; OMIM: NA; Uniprot ID:SPOC1_HUMAN; ENSEMBL ID: ENSG00000134668; HGNC ID: 26338 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.62604
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 1 / 564012 | 1 |  |
| neonate | 3 / 31097 | 96 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 41 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 96 / 3360307 | 28 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 27 / 1100989 | 24 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 11 / 149255 | 73 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 5 / 20155 | 248 |  |
| skin | 9 / 210574 | 42 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 38 / 330442 | 114 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 7 / 51780 | 135 | |
- Probe name: CUST_1146_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.69 ± 0.78 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.16 ± 0.72 | |
| Basal Part of Pons | 3.97 ± 0.53 | |
| Cerebellar Cortex | 4.08 ± 0.3 | |
| Cerebellar Nuclei | 4.07 ± 0.47 | |
| Claustrum | 3.56 ± 0.8 | |
| Epithalamus | 3.4 ± 0.24 | |
| Frontal Lobe | 3.69 ± 0.64 | |
| Globus Pallidus | 4.22 ± 0.6 | |
| Hypothalamus | 3.51 ± 0.61 | |
| Insula | 3.22 ± 0.65 | |
| Limbic Lobe | 3.52 ± 0.62 | |
| Mesencephalon | 3.94 ± 0.52 | |
| Myelencephalon | 3.75 ± 0.63 | |
| Occipital Lobe | 3.92 ± 0.67 | |
| Parietal Lobe | 3.81 ± 0.6 | |
| Pontine Tegmentum | 3.54 ± 0.62 | |
| Striatum | 3.39 ± 0.64 | |
| Subthalamus | 4.23 ± 0.52 | |
| Temporal Lobe | 3.58 ± 0.55 | |
| Thalamus | 4.15 ± 0.57 | |
| White Matter | 3.98 ± 0.65 | |
Mouse Brain ISH 