Annotation Detail for CCDC34
Basic Information Top
| Gene Symbol: | CCDC34 ( NY-REN-41,RAMA3 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 34 |
| Band: | 11p14.1 |
| Quick Links | Entrez ID:91057; OMIM: 612324; Uniprot ID:CCD34_HUMAN; ENSEMBL ID: ENSG00000109881; HGNC ID: 25079 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.143733
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 2 / 55556 | 35 | |
| adult | 60 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 12 / 136302 | 88 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 66 / 3360307 | 19 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 10 / 123478 | 80 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 11 / 96619 | 113 | |
| testis | 9 / 330442 | 27 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 12 / 47473 | 252 |  |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P203773
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.47 ± 0.96 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.04 ± 0.2 | |
| Basal Part of Pons | 1.7 ± 0.34 | |
| Cerebellar Cortex | 1.85 ± 0.68 | |
| Cerebellar Nuclei | 2.33 ± 0.71 | |
| Claustrum | 2.81 ± 0.78 | |
| Epithalamus | 1.72 ± 0.69 | |
| Frontal Lobe | 1.83 ± 0.56 | |
| Globus Pallidus | 2.51 ± 0.34 | |
| Hypothalamus | 2.05 ± 0.6 | |
| Insula | 1.91 ± 0.5 | |
| Limbic Lobe | 2.01 ± 0.58 | |
| Mesencephalon | 2.13 ± 0.62 | |
| Myelencephalon | 2.02 ± 0.62 | |
| Occipital Lobe | 2.04 ± 0.57 | |
| Parietal Lobe | 2.04 ± 0.64 | |
| Pontine Tegmentum | 2.08 ± 0.66 | |
| Striatum | 2.19 ± 0.6 | |
| Subthalamus | 2.13 ± 0.62 | |
| Temporal Lobe | 1.93 ± 0.65 | |
| Thalamus | 2.01 ± 0.61 | |
| White Matter | 2.55 ± 0.38 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2810027O19Rik | CB | Cerebellum | 3.36 | |
| 4.39 | | |||
| 2810027O19Rik | CTX | Cerebral cortex | 1.1 | |
| 1.21 | | |||
| 2810027O19Rik | HIP | Hippocampal region | 1.47 | |
| 1.56 | | |||
| 2810027O19Rik | HPF | Hippocampal formation | 1.16 | |
| 1.23 | | |||
| 2810027O19Rik | HY | Hypothalamus | 0.78 | |
| 0.66 | | |||
| 2810027O19Rik | LSX | Lateral septal complex | 0.25 | |
| 0.29 | | |||
| 2810027O19Rik | MB | Midbrain | 3.51 | |
| 5.54 | | |||
| 2810027O19Rik | MY | Medulla | 8.1 | |
| 9.96 | | |||
| 2810027O19Rik | OLF | Olfactory bulb | 4.53 | |
| 3.89 | | |||
| 2810027O19Rik | P | Pons | 2.42 | |
| 2.67 | | |||
| 2810027O19Rik | PAL | Pallidum | 1.68 | |
| 1.65 | | |||
| 2810027O19Rik | RHP | Retrohippocampal region | 0.57 | |
| 0.76 | | |||
| 2810027O19Rik | sAMY | Striatum-like amygdalar nuclei | 1.14 | |
| 0.91 | | |||
| 2810027O19Rik | STR | Striatum | 0.85 | |
| 0.74 | | |||
| 2810027O19Rik | STRd | Striatum dorsal region | 0.65 | |
| 0.67 | | |||
| 2810027O19Rik | STRv | Striatum ventral region | 1.82 | |
| 1.21 | | |||
| 2810027O19Rik | TH | Thalamus | 1.62 | |
| 1.6 | |