Annotation Detail for SEC22C
Basic Information Top
| Gene Symbol: | SEC22C ( DKFZp761F2321,MGC13261,MGC5373,SEC22L3 ) |
|---|---|
| Gene Full Name: | SEC22 vesicle trafficking protein homolog C (S. cerevisiae) |
| Band: | 3p22.1 |
| Quick Links | Entrez ID:9117; OMIM: 604028; Uniprot ID:SC22C_HUMAN; ENSEMBL ID: ENSG00000093183; HGNC ID: 16828 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.445892
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 45 / 564012 | 79 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 102 / 1939121 | 52 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 224 / 3360307 | 66 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 2 / 123478 | 16 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 55 / 1100989 | 49 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 19 / 215722 | 88 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 12 / 211054 | 56 | |
| heart | 6 / 89626 | 66 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 26 / 214812 | 121 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 17 / 210574 | 80 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 6 / 96619 | 62 | |
| testis | 20 / 330442 | 60 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P205874
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.91 ± 0.28 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.08 ± 0.17 | |
| Basal Part of Pons | 8.07 ± 0.2 | |
| Cerebellar Cortex | 8.03 ± 0.13 | |
| Cerebellar Nuclei | 8.33 ± 0.19 | |
| Claustrum | 7.82 ± 0.46 | |
| Epithalamus | 8.38 ± 0.29 | |
| Frontal Lobe | 8.15 ± 0.26 | |
| Globus Pallidus | 8.63 ± 0.13 | |
| Hypothalamus | 8.18 ± 0.24 | |
| Insula | 8.21 ± 0.24 | |
| Limbic Lobe | 7.91 ± 0.25 | |
| Mesencephalon | 8.18 ± 0.32 | |
| Myelencephalon | 8.08 ± 0.28 | |
| Occipital Lobe | 7.93 ± 0.23 | |
| Parietal Lobe | 8.01 ± 0.27 | |
| Pontine Tegmentum | 8.11 ± 0.2 | |
| Striatum | 7.93 ± 0.22 | |
| Subthalamus | 8.33 ± 0.27 | |
| Temporal Lobe | 8.1 ± 0.22 | |
| Thalamus | 8.15 ± 0.23 | |
| White Matter | 9.28 ± 0.15 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sec22c | HY | Hypothalamus | 25.82 | |
| 19.42 | |