AutismKB 2.0

Annotation Detail for SLC16A6


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Basic Information Top
Gene Symbol:SLC16A6 ( MCT6,MCT7 )
Gene Full Name: solute carrier family 16, member 6 (monocarboxylic acid transporter 7)
Band: 17q24.2
Quick LinksEntrez ID:9120; OMIM: 603880; Uniprot ID:MOT7_HUMAN; ENSEMBL ID: ENSG00000108932; HGNC ID: 10927
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate3 / 3109796
infant0 / 236200 
juvenile1 / 5555617
adult16 / 19391218
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor2 / 3436658
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia0 / 972500 
normal41 / 336030712
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone0 / 716550 
bone marrow0 / 488010 
brain10 / 11009899
cervix4 / 4817183
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye11 / 21105452
heart0 / 896260 
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver1 / 2077434
lung2 / 3369745
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate3 / 18934515
salivary gland0 / 201550 
skin18 / 21057485
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207038_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.25
Adipocyte5.4
AdrenalCortex6.6
Adrenalgland4.85
Amygdala5.3
Appendix6.9
AtrioventricularNode5.15
BDCA4+_DentriticCells6.9
Bonemarrow5.6
BronchialEpithelialCells5.2
CD105+_Endothelial5.65
CD14+_Monocytes11.7
CD19+_BCells(neg._sel.)5.85
CD33+_Myeloid47.9
CD34+6.55
CD4+_Tcells6.5
CD56+_NKCells24.7
CD71+_EarlyErythroid5.05
CD8+_Tcells5.3
CardiacMyocytes7.25
Caudatenucleus5.25
Cerebellum4.55
CerebellumPeduncles6.5
CiliaryGanglion4
CingulateCortex6.05
Colorectaladenocarcinoma6.6
DorsalRootGanglion4.5
FetalThyroid5.55
Fetalbrain5.4
Fetalliver4.75
Fetallung4.3
GlobusPallidus4.3
Heart7.8
Hypothalamus5.5
Kidney4.9
Leukemia_chronicMyelogenousK-5625
Leukemia_promyelocytic-HL-605.15
Leukemialymphoblastic(MOLT-4)4.3
Liver7.25
Lung5.8
Lymphnode4.7
Lymphoma_burkitts(Daudi)7.45
Lymphoma_burkitts(Raji)8.25
MedullaOblongata7.35
OccipitalLobe5.05
OlfactoryBulb5.1
Ovary4.1
Pancreas4.7
PancreaticIslet5.85
ParietalLobe6.3
Pituitary6.55
Placenta5.35
Pons8.5
PrefrontalCortex6.45
Prostate6.25
Salivarygland4.6
SkeletalMuscle10.95
Skin4.95
SmoothMuscle6.15
Spinalcord5.9
SubthalamicNucleus5.9
SuperiorCervicalGanglion9
TemporalLobe5.75
Testis4.9
TestisGermCell4.75
TestisIntersitial7.05
TestisLeydigCell6.85
TestisSeminiferousTubule6.15
Thalamus6.15
Thymus4.2
Thyroid6.35
Tongue8.1
Tonsil5.55
Trachea4.6
TrigeminalGanglion10.6
Uterus4.2
UterusCorpus7.65
WholeBlood28.75
Wholebrain4.2
colon5.35
pineal_day80.34
pineal_night92.28
retina6.9
small_intestine5.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P152791
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.05 ± 0.42
Basal Forebrain5.54 ± 0.28
Basal Part of Pons6.2 ± 0.24
Cerebellar Cortex5.34 ± 0.44
Cerebellar Nuclei6.48 ± 0.36
Claustrum4.91 ± 0.58
Epithalamus4.96 ± 0.6
Frontal Lobe5.52 ± 0.64
Globus Pallidus6.45 ± 0.34
Hypothalamus5.75 ± 0.88
Insula5.09 ± 0.43
Limbic Lobe5.26 ± 0.51
Mesencephalon5.57 ± 0.54
Myelencephalon5.54 ± 0.63
Occipital Lobe6.17 ± 0.42
Parietal Lobe5.91 ± 0.48
Pontine Tegmentum5.65 ± 0.62
Striatum5.99 ± 0.41
Subthalamus6.17 ± 0.43
Temporal Lobe5.36 ± 0.49
Thalamus6.04 ± 0.62
White Matter3.4 ± 0.48
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc16a6CBCerebellum7.62
5.48
Slc16a6CTXCerebral cortex1.35
0.95
Slc16a6HIPHippocampal region1.68
1.26
Slc16a6HPFHippocampal formation1.92
1.33
Slc16a6HYHypothalamus0.63
0.43
Slc16a6LSXLateral septal complex0.33
0.25
Slc16a6MBMidbrain0.92
0.88
Slc16a6MYMedulla9.16
7.74
Slc16a6OLFOlfactory bulb3.06
2.02
Slc16a6PPons6.17
4.81
Slc16a6PALPallidum0.54
0.35
Slc16a6RHPRetrohippocampal region1.96
1.17
Slc16a6sAMYStriatum-like amygdalar nuclei4.61
3.16
Slc16a6STRStriatum1.94
1.07
Slc16a6STRdStriatum dorsal region1.95
0.98
Slc16a6STRvStriatum ventral region1.15
0.76
Slc16a6THThalamus1.08
0.7
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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