Annotation Detail for SLC39A13
Basic Information Top
| Gene Symbol: | SLC39A13 ( FLJ25785 ) |
|---|---|
| Gene Full Name: | solute carrier family 39 (zinc transporter), member 13 |
| Band: | 11p11.2 |
| Quick Links | Entrez ID:91252; OMIM: 608735; Uniprot ID:S39AD_HUMAN; ENSEMBL ID: ENSG00000165915; HGNC ID: 20859 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.523664
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 12 / 564012 | 21 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 89 / 1939121 | 45 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 12 / 82823 | 144 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 4 / 17290 | 231 |  |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 117 / 3360307 | 34 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 38 / 1100989 | 34 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 4 / 20209 | 197 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 13 / 336974 | 38 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 8 / 210574 | 37 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 5 / 96619 | 51 | |
| testis | 9 / 330442 | 27 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_5973_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.5 ± 0.58 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.18 ± 0.48 | |
| Basal Part of Pons | 3.55 ± 0.63 | |
| Cerebellar Cortex | 3.4 ± 0.55 | |
| Cerebellar Nuclei | 3.96 ± 0.54 | |
| Claustrum | 3.36 ± 0.57 | |
| Epithalamus | 3.22 ± 0.53 | |
| Frontal Lobe | 3.75 ± 0.54 | |
| Globus Pallidus | 3.67 ± 0.31 | |
| Hypothalamus | 3.53 ± 0.26 | |
| Insula | 3.54 ± 0.69 | |
| Limbic Lobe | 3.47 ± 0.55 | |
| Mesencephalon | 3.8 ± 0.57 | |
| Myelencephalon | 3.63 ± 0.54 | |
| Occipital Lobe | 3.45 ± 0.53 | |
| Parietal Lobe | 3.77 ± 0.42 | |
| Pontine Tegmentum | 3.58 ± 0.51 | |
| Striatum | 3.91 ± 0.44 | |
| Subthalamus | 3.46 ± 0.62 | |
| Temporal Lobe | 3.57 ± 0.49 | |
| Thalamus | 3.87 ± 0.41 | |
| White Matter | 2.48 ± 0.29 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc39a13 | CB | Cerebellum | 24.88 | |
| 27.26 | | |||
| Slc39a13 | CTX | Cerebral cortex | 32.44 | |
| 22.13 | | |||
| Slc39a13 | HIP | Hippocampal region | 23.54 | |
| 22.85 | | |||
| Slc39a13 | HPF | Hippocampal formation | 22.5 | |
| 19.53 | | |||
| Slc39a13 | HY | Hypothalamus | 17.46 | |
| 13.17 | | |||
| Slc39a13 | LSX | Lateral septal complex | 11.64 | |
| 7.69 | | |||
| Slc39a13 | MB | Midbrain | 23.76 | |
| 22.37 | | |||
| Slc39a13 | MY | Medulla | 24.61 | |
| 27.35 | | |||
| Slc39a13 | OLF | Olfactory bulb | 29.04 | |
| 22.65 | | |||
| Slc39a13 | P | Pons | 26.35 | |
| 27.45 | | |||
| Slc39a13 | PAL | Pallidum | 19.14 | |
| 17.52 | | |||
| Slc39a13 | RHP | Retrohippocampal region | 21.28 | |
| 15.34 | | |||
| Slc39a13 | sAMY | Striatum-like amygdalar nuclei | 10.79 | |
| 8.18 | | |||
| Slc39a13 | STR | Striatum | 11.45 | |
| 8.18 | | |||
| Slc39a13 | STRd | Striatum dorsal region | 9.86 | |
| 7.12 | | |||
| Slc39a13 | STRv | Striatum ventral region | 16.65 | |
| 11.31 | | |||
| Slc39a13 | TH | Thalamus | 40.73 | |
| 33.98 | |