Annotation Detail for C9orf30
Basic Information Top
| Gene Symbol: | C9orf30 ( FLJ34973,MGC17337 ) |
|---|---|
| Gene Full Name: | chromosome 9 open reading frame 30 |
| Band: | 9q31.1 |
| Quick Links | Entrez ID:91283; OMIM: NA; Uniprot ID:CI030_HUMAN; ENSEMBL ID: ENSG00000066697; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.530272
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 28 / 564012 | 49 | |
| neonate | 2 / 31097 | 64 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 59 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 12 / 82823 | 144 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 82 / 3360307 | 24 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 1 / 102680 | 9 |  |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 16 / 1100989 | 14 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 10 / 149255 | 66 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 1 / 89626 | 11 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 15 / 336974 | 44 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 6 / 67052 | 89 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 8 / 330442 | 24 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_23_P146584
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.68 ± 0.27 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.54 ± 0.22 | |
| Basal Part of Pons | 7.61 ± 0.13 | |
| Cerebellar Cortex | 7.31 ± 0.21 | |
| Cerebellar Nuclei | 7.68 ± 0.28 | |
| Claustrum | 7.97 ± 0.31 | |
| Epithalamus | 7.22 ± 0.21 | |
| Frontal Lobe | 7.48 ± 0.26 | |
| Globus Pallidus | 7.74 ± 0.26 | |
| Hypothalamus | 7.32 ± 0.19 | |
| Insula | 7.43 ± 0.26 | |
| Limbic Lobe | 7.5 ± 0.34 | |
| Mesencephalon | 7.58 ± 0.35 | |
| Myelencephalon | 7.4 ± 0.29 | |
| Occipital Lobe | 7.58 ± 0.26 | |
| Parietal Lobe | 7.58 ± 0.29 | |
| Pontine Tegmentum | 7.44 ± 0.26 | |
| Striatum | 7.28 ± 0.25 | |
| Subthalamus | 7.75 ± 0.2 | |
| Temporal Lobe | 7.4 ± 0.26 | |
| Thalamus | 7.33 ± 0.21 | |
| White Matter | 7.62 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 5730528L13Rik | CB | Cerebellum | 3.93 | |
| 5.62 | | |||
| 5730528L13Rik | CTX | Cerebral cortex | 6.3 | |
| 5.63 | | |||
| 5730528L13Rik | HIP | Hippocampal region | 4.17 | |
| 4.55 | | |||
| 5730528L13Rik | HPF | Hippocampal formation | 3.18 | |
| 3.15 | | |||
| 5730528L13Rik | HY | Hypothalamus | 4.83 | |
| 4.35 | | |||
| 5730528L13Rik | LSX | Lateral septal complex | 1.55 | |
| 2.62 | | |||
| 5730528L13Rik | MB | Midbrain | 4.05 | |
| 4.46 | | |||
| 5730528L13Rik | MY | Medulla | 12.03 | |
| 13.94 | | |||
| 5730528L13Rik | OLF | Olfactory bulb | 6.57 | |
| 4.66 | | |||
| 5730528L13Rik | P | Pons | 7.27 | |
| 8.38 | | |||
| 5730528L13Rik | PAL | Pallidum | 8.53 | |
| 8.88 | | |||
| 5730528L13Rik | RHP | Retrohippocampal region | 1.36 | |
| 1.07 | | |||
| 5730528L13Rik | sAMY | Striatum-like amygdalar nuclei | 0.63 | |
| 0.77 | | |||
| 5730528L13Rik | STR | Striatum | 4.36 | |
| 3.83 | | |||
| 5730528L13Rik | STRd | Striatum dorsal region | 3.76 | |
| 3.71 | | |||
| 5730528L13Rik | STRv | Striatum ventral region | 9.79 | |
| 6.51 | | |||
| 5730528L13Rik | TH | Thalamus | 5.44 | |
| 5.8 | |