AutismKB 2.0

Annotation Detail for C19orf22


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Basic Information Top
Gene Symbol:C19orf22 ( MGC16353 )
Gene Full Name: chromosome 19 open reading frame 22
Band: 19p13.3
Quick LinksEntrez ID:91300; OMIM: NA; Uniprot ID:CS022_HUMAN; ENSEMBL ID: ENSG00000198858; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst3 / 6231948
fetus32 / 56401256
neonate0 / 310970 
infant1 / 2362042
juvenile3 / 5555653
adult83 / 193912142
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor6 / 26384522
glioma12 / 106883112
head and neck tumor5 / 13630236
kidney tumor6 / 6895987
leukemia7 / 9584273
liver tumor5 / 9635951
lung tumor4 / 10312738
lymphoma7 / 7175597
non-neoplasia1 / 9725010
normal139 / 336030741
ovarian tumor2 / 7668226
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS17 / 125680135
prostate cancer9 / 10268087
retinoblastoma1 / 4635621
skin tumor13 / 124949104
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites1 / 4001524
bladder1 / 2975733
blood12 / 12347897
bone5 / 7165569
bone marrow0 / 488010 
brain37 / 110098933
cervix2 / 4817141
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue11 / 21572250
esophagus0 / 202090 
eye11 / 21105452
heart5 / 8962655
intestine6 / 23447225
kidney9 / 21177742
larynx0 / 241450 
liver7 / 20774333
lung17 / 33697450
lymph0 / 442700 
lymph node2 / 9161021
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary3 / 10205129
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta18 / 28082564
prostate13 / 18934568
salivary gland4 / 20155198
skin14 / 21057466
spleen0 / 539520 
stomach3 / 9661931
testis3 / 3304429
thymus0 / 811310 
thyroid1 / 4747321
tonsil5 / 16999294
trachea0 / 524130 
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221764_at
Cell line Expression level Expression bar
721_B_lymphoblasts24.3
Adipocyte9.3
AdrenalCortex9.9
Adrenalgland7.4
Amygdala19.25
Appendix12.2
AtrioventricularNode7.35
BDCA4+_DentriticCells37.35
Bonemarrow377.55
BronchialEpithelialCells30.55
CD105+_Endothelial9.85
CD14+_Monocytes23.15
CD19+_BCells(neg._sel.)119.4
CD33+_Myeloid38.95
CD34+20.65
CD4+_Tcells117.7
CD56+_NKCells17.15
CD71+_EarlyErythroid156.1
CD8+_Tcells68.15
CardiacMyocytes12.4
Caudatenucleus8.8
Cerebellum7.65
CerebellumPeduncles10.4
CiliaryGanglion6.75
CingulateCortex9.45
Colorectaladenocarcinoma42.6
DorsalRootGanglion7.2
FetalThyroid12.25
Fetalbrain12.8
Fetalliver19.25
Fetallung38.05
GlobusPallidus6.75
Heart16.3
Hypothalamus10.15
Kidney7.75
Leukemia_chronicMyelogenousK-562157.25
Leukemia_promyelocytic-HL-608.4
Leukemialymphoblastic(MOLT-4)7.95
Liver33.7
Lung34.85
Lymphnode15.6
Lymphoma_burkitts(Daudi)11.75
Lymphoma_burkitts(Raji)20.6
MedullaOblongata8.55
OccipitalLobe8.45
OlfactoryBulb7.3
Ovary6.3
Pancreas8.25
PancreaticIslet23.65
ParietalLobe10.05
Pituitary10.8
Placenta12.15
Pons9
PrefrontalCortex12.6
Prostate39.05
Salivarygland6.95
SkeletalMuscle12.15
Skin7.35
SmoothMuscle22.2
Spinalcord9.95
SubthalamicNucleus8.65
SuperiorCervicalGanglion11.05
TemporalLobe8.65
Testis8
TestisGermCell7.8
TestisIntersitial7.75
TestisLeydigCell9.4
TestisSeminiferousTubule7.9
Thalamus8.2
Thymus32.85
Thyroid17.95
Tongue9.35
Tonsil18.9
Trachea13.65
TrigeminalGanglion10
Uterus18.05
UterusCorpus8.75
WholeBlood871.65
Wholebrain20.7
colon15.75
pineal_day14.54
pineal_night13.9
retina13.25
small_intestine9.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8310_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.41 ± 0.46
Basal Forebrain5.31 ± 0.22
Basal Part of Pons5.24 ± 0.36
Cerebellar Cortex5.06 ± 0.39
Cerebellar Nuclei4.96 ± 0.27
Claustrum5.49 ± 0.55
Epithalamus5.5 ± 0.56
Frontal Lobe5.24 ± 0.38
Globus Pallidus5.27 ± 0.37
Hypothalamus5.11 ± 0.48
Insula5.33 ± 0.34
Limbic Lobe5.41 ± 0.38
Mesencephalon5.12 ± 0.47
Myelencephalon5.26 ± 0.41
Occipital Lobe5.13 ± 0.32
Parietal Lobe5.21 ± 0.32
Pontine Tegmentum5.25 ± 0.41
Striatum5.38 ± 0.39
Subthalamus5.01 ± 0.5
Temporal Lobe5.44 ± 0.36
Thalamus5.16 ± 0.34
White Matter5.5 ± 0.45
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
C030046I01RikCBCerebellum33.02
35.94
C030046I01RikCTXCerebral cortex100
100
C030046I01RikHIPHippocampal region100
100
C030046I01RikHPFHippocampal formation100
100
C030046I01RikHYHypothalamus37.15
21.53
C030046I01RikLSXLateral septal complex100
97.92
C030046I01RikMBMidbrain46.54
34.22
C030046I01RikMYMedulla41
35.31
C030046I01RikOLFOlfactory bulb100
100
C030046I01RikPPons37.98
31.19
C030046I01RikPALPallidum71.91
54
C030046I01RikRHPRetrohippocampal region100
100
C030046I01RiksAMYStriatum-like amygdalar nuclei100
90.67
C030046I01RikSTRStriatum100
100
C030046I01RikSTRdStriatum dorsal region100
100
C030046I01RikSTRvStriatum ventral region100
100
C030046I01RikTHThalamus72.03
55.6
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CS022_HUMAN_2 20 2 21 VALENPECGPEAAEGTPGGR PRIDE
PAp00041555 17 23 39 LLPLPSCLPALASSQVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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