AutismKB 2.0

Annotation Detail for SYNGR3


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Basic Information Top
Gene Symbol:SYNGR3 ( MGC:20003 )
Gene Full Name: synaptogyrin 3
Band: 16p13.3
Quick LinksEntrez ID:9143; OMIM: 603927; Uniprot ID:SNG3_HUMAN; ENSEMBL ID: ENSG00000127561; HGNC ID: 11501
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus26 / 56401246
neonate0 / 310970 
infant1 / 2362042
juvenile9 / 55556161
adult35 / 193912118
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor4 / 6895958
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma3 / 7175541
non-neoplasia5 / 9725051
normal94 / 336030727
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS9 / 12568071
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain87 / 110098979
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye8 / 21105437
heart0 / 896260 
intestine0 / 2344720 
kidney4 / 21177718
larynx0 / 241450 
liver0 / 2077430 
lung3 / 3369748
lymph1 / 4427022
lymph node2 / 9161021
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve7 / 15768443
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta8 / 28082528
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid1 / 4747321
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205691_at
Cell line Expression level Expression bar
721_B_lymphoblasts31.6
Adipocyte5.75
AdrenalCortex6.55
Adrenalgland5.3
Amygdala1087.35
Appendix6.4
AtrioventricularNode5
BDCA4+_DentriticCells5.95
Bonemarrow6
BronchialEpithelialCells5.7
CD105+_Endothelial5.65
CD14+_Monocytes6.2
CD19+_BCells(neg._sel.)6.4
CD33+_Myeloid7.15
CD34+7.2
CD4+_Tcells6.2
CD56+_NKCells7.1
CD71+_EarlyErythroid5.35
CD8+_Tcells5.35
CardiacMyocytes7.8
Caudatenucleus169.25
Cerebellum217.55
CerebellumPeduncles187.15
CiliaryGanglion10.6
CingulateCortex232.9
Colorectaladenocarcinoma13.9
DorsalRootGanglion16.4
FetalThyroid5.9
Fetalbrain380.8
Fetalliver5.25
Fetallung4.6
GlobusPallidus222.7
Heart7.95
Hypothalamus1016.4
Kidney5.25
Leukemia_chronicMyelogenousK-56258.75
Leukemia_promyelocytic-HL-60156.25
Leukemialymphoblastic(MOLT-4)4.6
Liver8.45
Lung6.45
Lymphnode5.1
Lymphoma_burkitts(Daudi)13.7
Lymphoma_burkitts(Raji)338.05
MedullaOblongata193.2
OccipitalLobe450.55
OlfactoryBulb4.7
Ovary4.05
Pancreas4.75
PancreaticIslet6.45
ParietalLobe441.5
Pituitary41.05
Placenta163.15
Pons116.95
PrefrontalCortex671.05
Prostate6.8
Salivarygland4.95
SkeletalMuscle7.65
Skin4.85
SmoothMuscle6.7
Spinalcord25.9
SubthalamicNucleus416.7
SuperiorCervicalGanglion7.2
TemporalLobe325.35
Testis22.35
TestisGermCell6.35
TestisIntersitial5.15
TestisLeydigCell6.1
TestisSeminiferousTubule8.2
Thalamus590.7
Thymus4.6
Thyroid7.35
Tongue6.05
Tonsil5.95
Trachea4.95
TrigeminalGanglion10.7
Uterus4.75
UterusCorpus5.65
WholeBlood6.5
Wholebrain888.35
colon6.1
pineal_day7.08
pineal_night6.8
retina13.925
small_intestine5.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_624_PI416408490
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5 ± 0.71
Basal Forebrain5.19 ± 0.85
Basal Part of Pons6.03 ± 0.57
Cerebellar Cortex5.48 ± 0.82
Cerebellar Nuclei4.65 ± 0.77
Claustrum5.25 ± 0.91
Epithalamus5.24 ± 1.19
Frontal Lobe5.68 ± 0.71
Globus Pallidus3.82 ± 0.96
Hypothalamus6 ± 0.86
Insula5.78 ± 0.51
Limbic Lobe5.02 ± 0.9
Mesencephalon5.3 ± 0.7
Myelencephalon5.29 ± 0.94
Occipital Lobe4.34 ± 0.96
Parietal Lobe5.25 ± 0.73
Pontine Tegmentum5.08 ± 0.93
Striatum4.02 ± 0.91
Subthalamus6.12 ± 0.32
Temporal Lobe5.68 ± 0.62
Thalamus5.46 ± 0.72
White Matter3.08 ± 0.66
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Syngr3CBCerebellum77.53
77.87
Syngr3CTXCerebral cortex100
100
Syngr3HIPHippocampal region100
100
Syngr3HPFHippocampal formation100
100
Syngr3HYHypothalamus100
100
Syngr3LSXLateral septal complex100
100
Syngr3MBMidbrain100
100
Syngr3MYMedulla100
100
Syngr3OLFOlfactory bulb100
100
Syngr3PPons100
100
Syngr3PALPallidum100
100
Syngr3RHPRetrohippocampal region100
100
Syngr3sAMYStriatum-like amygdalar nuclei100
100
Syngr3STRStriatum100
100
Syngr3STRdStriatum dorsal region100
100
Syngr3STRvStriatum ventral region100
100
Syngr3THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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