AutismKB 2.0

Annotation Detail for SYNGR1


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Basic Information Top
Gene Symbol:SYNGR1 ( MGC:1939 )
Gene Full Name: synaptogyrin 1
Band: 22q13.1
Quick LinksEntrez ID:9145; OMIM: 603925; Uniprot ID:SNG1_HUMAN; ENSEMBL ID: ENSG00000100321; HGNC ID: 11498
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst3 / 6231948
fetus32 / 56401256
neonate0 / 310970 
infant5 / 23620211
juvenile1 / 5555617
adult89 / 193912145
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma4 / 10688337
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal215 / 336030763
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer0 / 1026800 
retinoblastoma4 / 4635686
skin tumor7 / 12494956
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone4 / 7165555
bone marrow2 / 4880140
brain126 / 1100989114
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye26 / 211054123
heart2 / 8962622
intestine0 / 2344720 
kidney5 / 21177723
larynx0 / 241450 
liver3 / 20774314
lung9 / 33697426
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth1 / 6705214
muscle4 / 10771537
nerve1 / 1576863
ovary1 / 1020519
pancreas3 / 21481213
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta7 / 28082524
prostate3 / 18934515
salivary gland0 / 201550 
skin14 / 21057466
spleen0 / 539520 
stomach0 / 966190 
testis10 / 33044230
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210613_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts208.45
Adipocyte9.5
AdrenalCortex10.4
Adrenalgland12.7
Amygdala9.7
Appendix9.8
AtrioventricularNode8.85
BDCA4+_DentriticCells14.1
Bonemarrow46.05
BronchialEpithelialCells9.45
CD105+_Endothelial1286.7
CD14+_Monocytes33.3
CD19+_BCells(neg._sel.)10.45
CD33+_Myeloid56.05
CD34+426.3
CD4+_Tcells10.2
CD56+_NKCells212.65
CD71+_EarlyErythroid189.35
CD8+_Tcells9
CardiacMyocytes12.95
Caudatenucleus8.65
Cerebellum7.7
CerebellumPeduncles11.1
CiliaryGanglion7.25
CingulateCortex9.95
Colorectaladenocarcinoma9.7
DorsalRootGanglion10.9
FetalThyroid9.4
Fetalbrain9.55
Fetalliver34.3
Fetallung7.9
GlobusPallidus7.2
Heart145.35
Hypothalamus10.1
Kidney8
Leukemia_chronicMyelogenousK-5628.75
Leukemia_promyelocytic-HL-608.45
Leukemialymphoblastic(MOLT-4)15.75
Liver12.9
Lung10.75
Lymphnode8.25
Lymphoma_burkitts(Daudi)12.3
Lymphoma_burkitts(Raji)12.85
MedullaOblongata8.65
OccipitalLobe8.6
OlfactoryBulb43.6
Ovary10.75
Pancreas7.85
PancreaticIslet10.4
ParietalLobe10.1
Pituitary11.2
Placenta35.3
Pons9.25
PrefrontalCortex11.8
Prostate11.85
Salivarygland7.8
SkeletalMuscle13.2
Skin10.35
SmoothMuscle11.15
Spinalcord10.35
SubthalamicNucleus8.9
SuperiorCervicalGanglion11.15
TemporalLobe8.85
Testis42.5
TestisGermCell10.85
TestisIntersitial8.15
TestisLeydigCell10.35
TestisSeminiferousTubule10.35
Thalamus9.9
Thymus7.55
Thyroid12.85
Tongue18.75
Tonsil9.4
Trachea8.2
TrigeminalGanglion9.75
Uterus7.85
UterusCorpus8.8
WholeBlood10.5
Wholebrain6.3
colon9.75
pineal_day11.92
pineal_night19.22
retina85.225
small_intestine10.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P348063
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.11 ± 0.79
Basal Forebrain7.9 ± 0.34
Basal Part of Pons9.01 ± 0.5
Cerebellar Cortex9 ± 0.29
Cerebellar Nuclei7.94 ± 0.65
Claustrum7.5 ± 0.52
Epithalamus7.39 ± 0.78
Frontal Lobe8.81 ± 0.55
Globus Pallidus6.81 ± 0.5
Hypothalamus8.2 ± 0.62
Insula8.81 ± 0.3
Limbic Lobe8.71 ± 0.65
Mesencephalon8.14 ± 0.55
Myelencephalon8.35 ± 0.82
Occipital Lobe7.75 ± 0.77
Parietal Lobe8.49 ± 0.63
Pontine Tegmentum8.16 ± 0.56
Striatum7.06 ± 0.71
Subthalamus8.59 ± 0.51
Temporal Lobe8.74 ± 0.51
Thalamus8.51 ± 0.51
White Matter6.34 ± 0.44
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Syngr1CBCerebellum71.8
100
Syngr1CTXCerebral cortex100
100
Syngr1HIPHippocampal region78.55
100
Syngr1HPFHippocampal formation100
100
Syngr1HYHypothalamus100
100
Syngr1LSXLateral septal complex83.59
77.47
Syngr1MBMidbrain100
100
Syngr1MYMedulla83.72
100
Syngr1OLFOlfactory bulb100
100
Syngr1PPons90.25
100
Syngr1PALPallidum91.05
100
Syngr1RHPRetrohippocampal region100
100
Syngr1sAMYStriatum-like amygdalar nuclei92.64
100
Syngr1STRStriatum54.68
56.28
Syngr1STRdStriatum dorsal region44.65
47.16
Syngr1STRvStriatum ventral region58.6
55.44
Syngr1THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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