AutismKB 2.0

Annotation Detail for SDCCAG1


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Basic Information Top
Gene Symbol:SDCCAG1 ( FLJ10051,NY-CO-1 )
Gene Full Name: serologically defined colon cancer antigen 1
Band: 14q22
Quick LinksEntrez ID:9147; OMIM: 608378; Uniprot ID:B3KSK1_HUMAN; ENSEMBL ID: ENSG00000165525; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst4 / 6231964
fetus38 / 56401267
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult108 / 193912155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor16 / 119369134
germ cell tumor12 / 26384545
glioma2 / 10688318
head and neck tumor14 / 136302102
kidney tumor3 / 6895943
leukemia5 / 9584252
liver tumor4 / 9635941
lung tumor8 / 10312777
lymphoma6 / 7175583
non-neoplasia0 / 972500 
normal189 / 336030756
ovarian tumor4 / 7668252
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer10 / 10268097
retinoblastoma1 / 4635621
skin tumor6 / 12494948
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites5 / 40015124
bladder3 / 29757100
blood9 / 12347872
bone5 / 7165569
bone marrow7 / 48801143
brain42 / 110098938
cervix1 / 4817120
connective tissue3 / 14925520
ear1 / 1621261
embryonic tissue16 / 21572274
esophagus0 / 202090 
eye8 / 21105437
heart1 / 8962611
intestine11 / 23447246
kidney13 / 21177761
larynx3 / 24145124
liver12 / 20774357
lung21 / 33697462
lymph5 / 44270112
lymph node6 / 9161065
mammary gland4 / 15327126
mouth6 / 6705289
muscle9 / 10771583
nerve3 / 15768190
ovary4 / 10205139
pancreas19 / 21481288
parathyroid2 / 2053997
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta4 / 28082514
prostate16 / 18934584
salivary gland2 / 2015599
skin7 / 21057433
spleen3 / 5395255
stomach11 / 96619113
testis13 / 33044239
thymus6 / 8113173
thyroid3 / 4747363
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus13 / 23287855
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218649_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts124.9
Adipocyte19.95
AdrenalCortex21.65
Adrenalgland9.3
Amygdala120.9
Appendix30.3
AtrioventricularNode22.15
BDCA4+_DentriticCells82.75
Bonemarrow14.3
BronchialEpithelialCells11.5
CD105+_Endothelial91.85
CD14+_Monocytes64.95
CD19+_BCells(neg._sel.)77.3
CD33+_Myeloid116.05
CD34+83.2
CD4+_Tcells137.65
CD56+_NKCells116.7
CD71+_EarlyErythroid23.25
CD8+_Tcells139.75
CardiacMyocytes21.85
Caudatenucleus22.2
Cerebellum11.5
CerebellumPeduncles15.85
CiliaryGanglion19.6
CingulateCortex21.75
Colorectaladenocarcinoma18.7
DorsalRootGanglion19.85
FetalThyroid15.75
Fetalbrain40.15
Fetalliver19.45
Fetallung20.3
GlobusPallidus21.1
Heart14.65
Hypothalamus59.55
Kidney11.2
Leukemia_chronicMyelogenousK-56230.9
Leukemia_promyelocytic-HL-6034.45
Leukemialymphoblastic(MOLT-4)17.35
Liver11.7
Lung7.15
Lymphnode37.75
Lymphoma_burkitts(Daudi)25.6
Lymphoma_burkitts(Raji)54.15
MedullaOblongata17
OccipitalLobe33.35
OlfactoryBulb17.45
Ovary16.9
Pancreas15.25
PancreaticIslet22.3
ParietalLobe15.35
Pituitary36.85
Placenta10.05
Pons19.85
PrefrontalCortex51.55
Prostate22.9
Salivarygland32.85
SkeletalMuscle16.85
Skin18.9
SmoothMuscle22.55
Spinalcord49.8
SubthalamicNucleus20.95
SuperiorCervicalGanglion25.55
TemporalLobe18.45
Testis10.9
TestisGermCell19.05
TestisIntersitial21.8
TestisLeydigCell21.55
TestisSeminiferousTubule16.45
Thalamus23.05
Thymus10.75
Thyroid60.4
Tongue20
Tonsil22
Trachea18.25
TrigeminalGanglion21.9
Uterus53
UterusCorpus13.05
WholeBlood30.45
Wholebrain13.8
colon21.55
pineal_day86.92
pineal_night86.6
retina32.3
small_intestine17.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P6808
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala11.27 ± 0.29
Basal Forebrain11.53 ± 0.17
Basal Part of Pons11.43 ± 0.2
Cerebellar Cortex11.7 ± 0.15
Cerebellar Nuclei11.39 ± 0.23
Claustrum11.41 ± 0.2
Epithalamus11.62 ± 0.23
Frontal Lobe11.44 ± 0.2
Globus Pallidus11.73 ± 0.19
Hypothalamus11.41 ± 0.25
Insula11.42 ± 0.16
Limbic Lobe11.33 ± 0.21
Mesencephalon11.46 ± 0.21
Myelencephalon11.41 ± 0.25
Occipital Lobe11.45 ± 0.26
Parietal Lobe11.55 ± 0.22
Pontine Tegmentum11.48 ± 0.23
Striatum11.41 ± 0.25
Subthalamus11.59 ± 0.02
Temporal Lobe11.41 ± 0.2
Thalamus11.48 ± 0.22
White Matter12.21 ± 0.43
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00080336 15 608 622 VITSAWWVYHHQVSK Peptide Atlas
SDCG1_HUMAN_12 14 12 25 AVLAELNASLLGMR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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