AutismKB 2.0

Annotation Detail for CTDP1


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Basic Information Top
Gene Symbol:CTDP1 ( CCFDN,FCP1 )
Gene Full Name: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Band: 18q23
Quick LinksEntrez ID:9150; OMIM: 604927; Uniprot ID:CTDP1_HUMAN; ENSEMBL ID: ENSG00000060069; HGNC ID: 2498
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus8 / 56401214
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult45 / 193912123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor0 / 343660 
chondrosarcoma11 / 82823132
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor7 / 26384526
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia9 / 9584293
liver tumor1 / 9635910
lung tumor6 / 10312758
lymphoma5 / 7175569
non-neoplasia3 / 9725030
normal65 / 336030719
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer1 / 1026809
retinoblastoma2 / 4635643
skin tumor3 / 12494924
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood8 / 12347864
bone1 / 7165513
bone marrow0 / 488010 
brain12 / 110098910
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye7 / 21105433
heart1 / 8962611
intestine8 / 23447234
kidney3 / 21177714
larynx0 / 241450 
liver1 / 2077434
lung19 / 33697456
lymph5 / 44270112
lymph node2 / 9161021
mammary gland6 / 15327139
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary2 / 10205119
pancreas12 / 21481255
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate1 / 1893455
salivary gland0 / 201550 
skin3 / 21057414
spleen2 / 5395237
stomach2 / 9661920
testis14 / 33044242
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205035_at
Cell line Expression level Expression bar
721_B_lymphoblasts9
Adipocyte5.75
AdrenalCortex5.85
Adrenalgland4.4
Amygdala5.5
Appendix5.15
AtrioventricularNode4.05
BDCA4+_DentriticCells28.9
Bonemarrow5.2
BronchialEpithelialCells5.1
CD105+_Endothelial5.3
CD14+_Monocytes30.1
CD19+_BCells(neg._sel.)10.25
CD33+_Myeloid8.4
CD34+6.5
CD4+_Tcells7.35
CD56+_NKCells10.75
CD71+_EarlyErythroid6.5
CD8+_Tcells5.1
CardiacMyocytes5.65
Caudatenucleus4.75
Cerebellum4.2
CerebellumPeduncles5.9
CiliaryGanglion3.85
CingulateCortex5.35
Colorectaladenocarcinoma5.05
DorsalRootGanglion4
FetalThyroid5.55
Fetalbrain5.65
Fetalliver4.45
Fetallung4.1
GlobusPallidus3.8
Heart6.5
Hypothalamus5.75
Kidney4.65
Leukemia_chronicMyelogenousK-5624.7
Leukemia_promyelocytic-HL-605.4
Leukemialymphoblastic(MOLT-4)5.15
Liver6.85
Lung14.9
Lymphnode4.8
Lymphoma_burkitts(Daudi)6.7
Lymphoma_burkitts(Raji)7.15
MedullaOblongata4.7
OccipitalLobe4.8
OlfactoryBulb4.05
Ovary3.45
Pancreas4.15
PancreaticIslet5.45
ParietalLobe5.5
Pituitary6.75
Placenta6.7
Pons5
PrefrontalCortex6.35
Prostate6.95
Salivarygland4.15
SkeletalMuscle6.05
Skin3.95
SmoothMuscle6.15
Spinalcord5.7
SubthalamicNucleus4.85
SuperiorCervicalGanglion6.6
TemporalLobe4.85
Testis16.65
TestisGermCell5.15
TestisIntersitial4.45
TestisLeydigCell6.05
TestisSeminiferousTubule4.7
Thalamus5.3
Thymus4.15
Thyroid6.65
Tongue5.05
Tonsil5.15
Trachea4.35
TrigeminalGanglion5.15
Uterus4.1
UterusCorpus4.6
WholeBlood9.6
Wholebrain4.4
colon5.15
pineal_day6.06
pineal_night6.06
retina6.2
small_intestine4.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P89727
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.89 ± 1.04
Basal Forebrain2.51 ± 0.47
Basal Part of Pons2.37 ± 0.5
Cerebellar Cortex2.66 ± 0.75
Cerebellar Nuclei2.51 ± 0.65
Claustrum2.81 ± 0.86
Epithalamus2.18 ± 0.68
Frontal Lobe2.31 ± 0.72
Globus Pallidus2.54 ± 0.64
Hypothalamus2.09 ± 0.58
Insula2.2 ± 0.5
Limbic Lobe2.46 ± 0.76
Mesencephalon2.59 ± 0.97
Myelencephalon2.5 ± 0.72
Occipital Lobe2.54 ± 0.82
Parietal Lobe2.44 ± 0.74
Pontine Tegmentum2.45 ± 0.69
Striatum2.52 ± 1.06
Subthalamus2.45 ± 0.71
Temporal Lobe2.45 ± 0.75
Thalamus2.44 ± 0.7
White Matter2.93 ± 0.66
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00505804 38 489 526 AAPEGAGALAQGSSLEPGRPAAPSLPGEAEPGAHAPDK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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