AutismKB 2.0

Annotation Detail for EBAG9


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Basic Information Top
Gene Symbol:EBAG9 ( EB9,PDAF,RCAS1 )
Gene Full Name: estrogen receptor binding site associated, antigen, 9
Band: 8q23.2
Quick LinksEntrez ID:9166; OMIM: 605772; Uniprot ID:RCAS1_HUMAN; ENSEMBL ID: ENSG00000147654; HGNC ID: 3123
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus10 / 56401217
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult34 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia4 / 9584241
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal79 / 336030723
ovarian tumor0 / 766820 
pancreatic tumor10 / 10461695
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow4 / 4880181
brain14 / 110098912
cervix5 / 48171103
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye13 / 21105461
heart0 / 896260 
intestine6 / 23447225
kidney5 / 21177723
larynx0 / 241450 
liver3 / 20774314
lung6 / 33697417
lymph2 / 4427045
lymph node4 / 9161043
mammary gland2 / 15327113
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary2 / 10205119
pancreas20 / 21481293
parathyroid2 / 2053997
pharynx2 / 4132848
pituitary gland3 / 16585180
placenta4 / 28082514
prostate0 / 1893450 
salivary gland3 / 20155148
skin6 / 21057428
spleen1 / 5395218
stomach2 / 9661920
testis6 / 33044218
thymus0 / 811310 
thyroid4 / 4747384
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord2 / 13680146
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204274_at
Cell line Expression level Expression bar
721_B_lymphoblasts339.8
Adipocyte60.1
AdrenalCortex40.95
Adrenalgland49.75
Amygdala260.2
Appendix65.85
AtrioventricularNode25.5
BDCA4+_DentriticCells254.6
Bonemarrow33.75
BronchialEpithelialCells107.45
CD105+_Endothelial164.45
CD14+_Monocytes115.75
CD19+_BCells(neg._sel.)517.1
CD33+_Myeloid184.95
CD34+263.4
CD4+_Tcells228.6
CD56+_NKCells220.75
CD71+_EarlyErythroid60.75
CD8+_Tcells195.4
CardiacMyocytes34.2
Caudatenucleus62.9
Cerebellum48.75
CerebellumPeduncles67.15
CiliaryGanglion32.6
CingulateCortex70.7
Colorectaladenocarcinoma35.65
DorsalRootGanglion43.1
FetalThyroid74.55
Fetalbrain74.05
Fetalliver65.9
Fetallung55.95
GlobusPallidus47.8
Heart30.5
Hypothalamus118.5
Kidney43.4
Leukemia_chronicMyelogenousK-562222.2
Leukemia_promyelocytic-HL-60108.4
Leukemialymphoblastic(MOLT-4)66.8
Liver70.6
Lung48.85
Lymphnode105.25
Lymphoma_burkitts(Daudi)180.4
Lymphoma_burkitts(Raji)165.35
MedullaOblongata69.15
OccipitalLobe59.6
OlfactoryBulb50
Ovary40.1
Pancreas61.15
PancreaticIslet154.2
ParietalLobe38.6
Pituitary148.8
Placenta34.05
Pons56.75
PrefrontalCortex132.55
Prostate102.1
Salivarygland103.25
SkeletalMuscle64.3
Skin35.4
SmoothMuscle71.25
Spinalcord142.95
SubthalamicNucleus60.7
SuperiorCervicalGanglion65
TemporalLobe58.35
Testis68.2
TestisGermCell68.5
TestisIntersitial56.95
TestisLeydigCell64.55
TestisSeminiferousTubule54
Thalamus64.2
Thymus33.9
Thyroid880.45
Tongue39.35
Tonsil50.05
Trachea61.8
TrigeminalGanglion24.55
Uterus100.35
UterusCorpus32.95
WholeBlood127.4
Wholebrain123.9
colon147.45
pineal_day193.34
pineal_night158.32
retina87.525
small_intestine72.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9836_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.82 ± 0.2
Basal Forebrain8.63 ± 0.15
Basal Part of Pons8.45 ± 0.16
Cerebellar Cortex8.59 ± 0.2
Cerebellar Nuclei8.7 ± 0.16
Claustrum8.77 ± 0.2
Epithalamus8.57 ± 0.19
Frontal Lobe8.56 ± 0.16
Globus Pallidus8.66 ± 0.17
Hypothalamus8.66 ± 0.14
Insula8.66 ± 0.19
Limbic Lobe8.66 ± 0.17
Mesencephalon8.66 ± 0.17
Myelencephalon8.57 ± 0.18
Occipital Lobe8.75 ± 0.15
Parietal Lobe8.66 ± 0.19
Pontine Tegmentum8.68 ± 0.2
Striatum8.4 ± 0.16
Subthalamus8.56 ± 0.07
Temporal Lobe8.7 ± 0.17
Thalamus8.49 ± 0.17
White Matter8.65 ± 0.18
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ebag9CBCerebellum7.77
7.98
Ebag9CTXCerebral cortex14.22
9.84
Ebag9HIPHippocampal region11.8
11.13
Ebag9HPFHippocampal formation13.48
11.72
Ebag9HYHypothalamus2.3
1.88
Ebag9LSXLateral septal complex3.8
2.58
Ebag9MBMidbrain6.51
6.3
Ebag9MYMedulla12.92
14.22
Ebag9OLFOlfactory bulb11.91
9.45
Ebag9PPons7.11
8.4
Ebag9PALPallidum5.96
5.41
Ebag9RHPRetrohippocampal region17
13
Ebag9sAMYStriatum-like amygdalar nuclei7.7
5.64
Ebag9STRStriatum8.1
5.28
Ebag9STRdStriatum dorsal region9.26
6.08
Ebag9STRvStriatum ventral region7.25
4.29
Ebag9THThalamus5.85
4.53
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00004562 19 112 130 KREPLNFGIPDGSTGFSSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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