Annotation Detail for LONRF1
Basic Information Top
| Gene Symbol: | LONRF1 ( FLJ23749,RNF191 ) |
|---|---|
| Gene Full Name: | LON peptidase N-terminal domain and ring finger 1 |
| Band: | 8p23.1 |
| Quick Links | Entrez ID:91694; OMIM: NA; Uniprot ID:LONF1_HUMAN; ENSEMBL ID: ENSG00000154359; HGNC ID: 26302 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.180178
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 16 / 564012 | 28 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 55 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 84 / 3360307 | 24 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 13 / 102680 | 126 |  |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 5 / 89626 | 55 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 1 / 24145 | 41 | |
| liver | 4 / 207743 | 19 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 14 / 189345 | 73 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 18 / 330442 | 54 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P934202
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.28 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.4 ± 0.27 | |
| Basal Part of Pons | 5.16 ± 0.35 | |
| Cerebellar Cortex | 5.71 ± 0.3 | |
| Cerebellar Nuclei | 4.54 ± 0.47 | |
| Claustrum | 5.53 ± 0.45 | |
| Epithalamus | 5.56 ± 0.22 | |
| Frontal Lobe | 5.4 ± 0.47 | |
| Globus Pallidus | 4.63 ± 0.56 | |
| Hypothalamus | 5.17 ± 0.39 | |
| Insula | 5.45 ± 0.22 | |
| Limbic Lobe | 5.61 ± 0.46 | |
| Mesencephalon | 5.38 ± 0.5 | |
| Myelencephalon | 5.32 ± 0.5 | |
| Occipital Lobe | 5.56 ± 0.41 | |
| Parietal Lobe | 5.38 ± 0.44 | |
| Pontine Tegmentum | 5.44 ± 0.51 | |
| Striatum | 5.04 ± 0.47 | |
| Subthalamus | 5.59 ± 1.99 | |
| Temporal Lobe | 5.47 ± 0.43 | |
| Thalamus | 5.46 ± 0.4 | |
| White Matter | 4.85 ± 0.34 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lonrf1 | CB | Cerebellum | 14.63 | |
| 17.25 | | |||
| Lonrf1 | CTX | Cerebral cortex | 66.46 | |
| 53.9 | | |||
| Lonrf1 | HIP | Hippocampal region | 28.66 | |
| 40.37 | | |||
| Lonrf1 | HPF | Hippocampal formation | 47.41 | |
| 54.48 | | |||
| Lonrf1 | HY | Hypothalamus | 8.28 | |
| 6.45 | | |||
| Lonrf1 | LSX | Lateral septal complex | 28.55 | |
| 20.31 | | |||
| Lonrf1 | MB | Midbrain | 15.79 | |
| 13.82 | | |||
| Lonrf1 | MY | Medulla | 20.69 | |
| 22.46 | | |||
| Lonrf1 | OLF | Olfactory bulb | 47.5 | |
| 38.27 | | |||
| Lonrf1 | P | Pons | 12.29 | |
| 12.85 | | |||
| Lonrf1 | PAL | Pallidum | 15.04 | |
| 12.92 | | |||
| Lonrf1 | RHP | Retrohippocampal region | 83.5 | |
| 78.47 | | |||
| Lonrf1 | sAMY | Striatum-like amygdalar nuclei | 33.2 | |
| 25.17 | | |||
| Lonrf1 | STR | Striatum | 34.22 | |
| 23.99 | | |||
| Lonrf1 | STRd | Striatum dorsal region | 35.38 | |
| 24.91 | | |||
| Lonrf1 | STRv | Striatum ventral region | 30.24 | |
| 19.49 | | |||
| Lonrf1 | TH | Thalamus | 57.34 | |
| 51.84 | |