Annotation Detail for WDR20
Basic Information Top
| Gene Symbol: | WDR20 ( DMR,FLJ33659,MGC33177,MGC33183 ) |
|---|---|
| Gene Full Name: | WD repeat domain 20 |
| Band: | 14q32.31 |
| Quick Links | Entrez ID:91833; OMIM: NA; Uniprot ID:WDR20_HUMAN; ENSEMBL ID: ENSG00000140153; HGNC ID: 19667 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.36859
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 54 / 564012 | 95 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 88 / 1939121 | 45 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 11 / 95842 | 114 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 209 / 3360307 | 62 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 6 / 123478 | 48 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 75 / 1100989 | 68 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 1 / 89626 | 11 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 15 / 214812 | 69 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 4 / 96619 | 41 | |
| testis | 28 / 330442 | 84 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: CUST_10416_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.53 ± 0.41 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.63 ± 0.35 | |
| Basal Part of Pons | 7.34 ± 0.28 | |
| Cerebellar Cortex | 7.69 ± 0.22 | |
| Cerebellar Nuclei | 7.63 ± 0.39 | |
| Claustrum | 7.35 ± 0.34 | |
| Epithalamus | 7.08 ± 0.57 | |
| Frontal Lobe | 7.25 ± 0.45 | |
| Globus Pallidus | 8.04 ± 0.24 | |
| Hypothalamus | 7.15 ± 0.47 | |
| Insula | 7.17 ± 0.35 | |
| Limbic Lobe | 7.46 ± 0.36 | |
| Mesencephalon | 7.54 ± 0.43 | |
| Myelencephalon | 7.43 ± 0.5 | |
| Occipital Lobe | 7.66 ± 0.39 | |
| Parietal Lobe | 7.46 ± 0.45 | |
| Pontine Tegmentum | 7.46 ± 0.39 | |
| Striatum | 7.55 ± 0.53 | |
| Subthalamus | 7.59 ± 0.08 | |
| Temporal Lobe | 7.26 ± 0.37 | |
| Thalamus | 7.47 ± 0.28 | |
| White Matter | 8.86 ± 0.39 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Wdr20b | CB | Cerebellum | 36.72 | |
| 51.09 | | |||
| Wdr20b | CTX | Cerebral cortex | 53.63 | |
| 39.99 | | |||
| Wdr20b | HIP | Hippocampal region | 39.06 | |
| 48.27 | | |||
| Wdr20b | HPF | Hippocampal formation | 43.53 | |
| 44.48 | | |||
| Wdr20b | HY | Hypothalamus | 26.63 | |
| 23.88 | | |||
| Wdr20b | LSX | Lateral septal complex | 23.15 | |
| 16.16 | | |||
| Wdr20b | MB | Midbrain | 33.95 | |
| 32.84 | | |||
| Wdr20b | MY | Medulla | 35.3 | |
| 40 | | |||
| Wdr20b | OLF | Olfactory bulb | 49.36 | |
| 41.08 | | |||
| Wdr20b | P | Pons | 28.75 | |
| 32.86 | | |||
| Wdr20b | PAL | Pallidum | 30.05 | |
| 26.91 | | |||
| Wdr20b | RHP | Retrohippocampal region | 51.29 | |
| 40.68 | | |||
| Wdr20b | sAMY | Striatum-like amygdalar nuclei | 30.53 | |
| 21.65 | | |||
| Wdr20b | STR | Striatum | 26.31 | |
| 19.3 | | |||
| Wdr20b | STRd | Striatum dorsal region | 24.56 | |
| 18.88 | | |||
| Wdr20b | STRv | Striatum ventral region | 30.93 | |
| 20.09 | | |||
| Wdr20b | TH | Thalamus | 34.55 | |
| 31.96 | |