Annotation Detail for RFT1
Basic Information Top
| Gene Symbol: | RFT1 ( CDG1N,DKFZp667J092,FLJ25945 ) |
|---|---|
| Gene Full Name: | RFT1 homolog (S. cerevisiae) |
| Band: | 3p21.1 |
| Quick Links | Entrez ID:91869; OMIM: 611908; Uniprot ID:RFT1_HUMAN; ENSEMBL ID: ENSG00000163933; HGNC ID: 30220 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.631910
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 62 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 53 / 3360307 | 15 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 7 / 123478 | 56 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 3 / 211054 | 14 | |
| heart | 1 / 89626 | 11 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 7 / 336974 | 20 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 4 / 330442 | 12 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P93741
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.29 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.06 ± 0.1 | |
| Basal Part of Pons | 5.93 ± 0.29 | |
| Cerebellar Cortex | 6.14 ± 0.3 | |
| Cerebellar Nuclei | 6.01 ± 0.39 | |
| Claustrum | 6.02 ± 0.35 | |
| Epithalamus | 5.49 ± 0.24 | |
| Frontal Lobe | 5.85 ± 0.32 | |
| Globus Pallidus | 5.45 ± 0.21 | |
| Hypothalamus | 5.61 ± 0.23 | |
| Insula | 5.94 ± 0.24 | |
| Limbic Lobe | 6.13 ± 0.37 | |
| Mesencephalon | 5.95 ± 0.32 | |
| Myelencephalon | 5.98 ± 0.37 | |
| Occipital Lobe | 6.34 ± 0.36 | |
| Parietal Lobe | 6.1 ± 0.29 | |
| Pontine Tegmentum | 5.97 ± 0.38 | |
| Striatum | 6.13 ± 0.35 | |
| Subthalamus | 5.59 ± 0.42 | |
| Temporal Lobe | 6.06 ± 0.29 | |
| Thalamus | 5.85 ± 0.29 | |
| White Matter | 6.54 ± 0.15 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rft1 | CB | Cerebellum | 5.89 | |
| 7.86 | | |||
| Rft1 | CTX | Cerebral cortex | 4.22 | |
| 4.03 | | |||
| Rft1 | HIP | Hippocampal region | 3.64 | |
| 3.98 | | |||
| Rft1 | HPF | Hippocampal formation | 3.37 | |
| 3.47 | | |||
| Rft1 | HY | Hypothalamus | 1.61 | |
| 1.38 | | |||
| Rft1 | LSX | Lateral septal complex | 2.44 | |
| 1.45 | | |||
| Rft1 | MB | Midbrain | 3.36 | |
| 3.72 | | |||
| Rft1 | MY | Medulla | 7.9 | |
| 9.24 | | |||
| Rft1 | OLF | Olfactory bulb | 4.16 | |
| 3.5 | | |||
| Rft1 | P | Pons | 3.84 | |
| 4.31 | | |||
| Rft1 | PAL | Pallidum | 2.58 | |
| 2.67 | | |||
| Rft1 | RHP | Retrohippocampal region | 2.93 | |
| 2.68 | | |||
| Rft1 | sAMY | Striatum-like amygdalar nuclei | 1.2 | |
| 1.27 | | |||
| Rft1 | STR | Striatum | 1.99 | |
| 1.64 | | |||
| Rft1 | STRd | Striatum dorsal region | 1.82 | |
| 1.54 | | |||
| Rft1 | STRv | Striatum ventral region | 2.95 | |
| 2.32 | | |||
| Rft1 | TH | Thalamus | 6.28 | |
| 5.72 | |