AutismKB 2.0

Annotation Detail for SLC24A1


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Basic Information Top
Gene Symbol:SLC24A1 ( HsT17412,KIAA0702,NCKX,NCKX1,RODX )
Gene Full Name: solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
Band: 15q22.31
Quick LinksEntrez ID:9187; OMIM: 603617; Uniprot ID:NCKX1_HUMAN; ENSEMBL ID: ENSG00000074621; HGNC ID: 10975
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus8 / 56401214
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult46 / 193912123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal70 / 336030720
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor7 / 12494956
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder2 / 2975767
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain4 / 11009893
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye24 / 211054113
heart2 / 8962622
intestine4 / 23447217
kidney4 / 21177718
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node2 / 9161021
mammary gland1 / 1532716
mouth0 / 670520 
muscle7 / 10771564
nerve0 / 157680 
ovary0 / 1020510 
pancreas10 / 21481246
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin9 / 21057442
spleen1 / 5395218
stomach0 / 966190 
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus2 / 2328788
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211842_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.5
Adipocyte3.5
AdrenalCortex3.8
Adrenalgland3
Amygdala3.8
Appendix3.6
AtrioventricularNode2.8
BDCA4+_DentriticCells3.95
Bonemarrow3.5
BronchialEpithelialCells3.55
CD105+_Endothelial3.6
CD14+_Monocytes3.8
CD19+_BCells(neg._sel.)3.8
CD33+_Myeloid4.6
CD34+4.55
CD4+_Tcells3.9
CD56+_NKCells4.3
CD71+_EarlyErythroid3.35
CD8+_Tcells3.5
CardiacMyocytes4.75
Caudatenucleus3.15
Cerebellum2.9
CerebellumPeduncles4.05
CiliaryGanglion2.55
CingulateCortex3.65
Colorectaladenocarcinoma3.6
DorsalRootGanglion2.75
FetalThyroid3.45
Fetalbrain3.6
Fetalliver3.1
Fetallung2.95
GlobusPallidus2.6
Heart4.6
Hypothalamus3.9
Kidney2.9
Leukemia_chronicMyelogenousK-5623.25
Leukemia_promyelocytic-HL-603.15
Leukemialymphoblastic(MOLT-4)2.9
Liver4.75
Lung3.9
Lymphnode3.05
Lymphoma_burkitts(Daudi)4.55
Lymphoma_burkitts(Raji)5.05
MedullaOblongata3.25
OccipitalLobe3.2
OlfactoryBulb2.85
Ovary2.35
Pancreas2.9
PancreaticIslet3.8
ParietalLobe3.75
Pituitary4.15
Placenta3.7
Pons3.4
PrefrontalCortex4.5
Prostate4.2
Salivarygland2.9
SkeletalMuscle4.2
Skin2.8
SmoothMuscle4.05
Spinalcord3.8
SubthalamicNucleus3.3
SuperiorCervicalGanglion4.05
TemporalLobe3.25
Testis3.05
TestisGermCell3
TestisIntersitial3
TestisLeydigCell3.55
TestisSeminiferousTubule3.05
Thalamus3.6
Thymus2.8
Thyroid4.55
Tongue3.5
Tonsil3.5
Trachea3
TrigeminalGanglion3.55
Uterus2.95
UterusCorpus3.2
WholeBlood3.95
Wholebrain3
colon3.6
pineal_day4.56
pineal_night4.42
retina14.925
small_intestine3.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P205913
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.09 ± 0.89
Basal Forebrain2.82 ± 0.48
Basal Part of Pons2.6 ± 0.73
Cerebellar Cortex2.3 ± 0.61
Cerebellar Nuclei2.89 ± 0.61
Claustrum3.17 ± 0.89
Epithalamus4.38 ± 0.58
Frontal Lobe2.64 ± 0.77
Globus Pallidus4.14 ± 0.25
Hypothalamus2.4 ± 0.68
Insula2.5 ± 0.52
Limbic Lobe2.65 ± 0.72
Mesencephalon2.97 ± 0.64
Myelencephalon2.83 ± 0.74
Occipital Lobe2.8 ± 0.68
Parietal Lobe2.75 ± 0.71
Pontine Tegmentum2.8 ± 0.75
Striatum3.45 ± 0.63
Subthalamus2.63 ± 0.16
Temporal Lobe2.61 ± 0.76
Thalamus2.72 ± 0.6
White Matter3.91 ± 0.48
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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