AutismKB 2.0

Annotation Detail for COG7


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Basic Information Top
Gene Symbol:COG7 ( CDG2E )
Gene Full Name: component of oligomeric golgi complex 7
Band: 16p12.2
Quick LinksEntrez ID:91949; OMIM: 606978; Uniprot ID:COG7_HUMAN; ENSEMBL ID: ENSG00000168434; HGNC ID: 18622
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus4 / 5640127
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult53 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor2 / 11424617
esophageal tumor1 / 1729057
gastrointestinal tumor3 / 11936925
germ cell tumor2 / 2638457
glioma2 / 10688318
head and neck tumor6 / 13630244
kidney tumor4 / 6895958
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal83 / 336030724
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites1 / 4001524
bladder2 / 2975767
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain27 / 110098924
cervix5 / 48171103
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus1 / 2020949
eye3 / 21105414
heart0 / 896260 
intestine3 / 23447212
kidney4 / 21177718
larynx1 / 2414541
liver4 / 20774319
lung3 / 3369748
lymph1 / 4427022
lymph node1 / 9161010
mammary gland2 / 15327113
mouth2 / 6705229
muscle4 / 10771537
nerve1 / 1576863
ovary1 / 1020519
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta12 / 28082542
prostate4 / 18934521
salivary gland2 / 2015599
skin4 / 21057418
spleen0 / 539520 
stomach3 / 9661931
testis3 / 3304429
thymus0 / 811310 
thyroid3 / 4747363
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213190_at
Cell line Expression level Expression bar
721_B_lymphoblasts14.95
Adipocyte6
AdrenalCortex7.8
Adrenalgland5.3
Amygdala6.55
Appendix5.4
AtrioventricularNode6.6
BDCA4+_DentriticCells10.2
Bonemarrow6.75
BronchialEpithelialCells5.9
CD105+_Endothelial8.1
CD14+_Monocytes6.45
CD19+_BCells(neg._sel.)6.3
CD33+_Myeloid9.45
CD34+10.35
CD4+_Tcells6.6
CD56+_NKCells12.2
CD71+_EarlyErythroid5.5
CD8+_Tcells7.5
CardiacMyocytes8.7
Caudatenucleus5.8
Cerebellum5.05
CerebellumPeduncles8.3
CiliaryGanglion5.4
CingulateCortex6.1
Colorectaladenocarcinoma6.15
DorsalRootGanglion4.85
FetalThyroid5.7
Fetalbrain6.25
Fetalliver5.4
Fetallung5.7
GlobusPallidus5
Heart8.5
Hypothalamus7.75
Kidney5.2
Leukemia_chronicMyelogenousK-5626.7
Leukemia_promyelocytic-HL-605.45
Leukemialymphoblastic(MOLT-4)5.05
Liver8.5
Lung7.3
Lymphnode5.9
Lymphoma_burkitts(Daudi)7.75
Lymphoma_burkitts(Raji)8.85
MedullaOblongata5.3
OccipitalLobe5.4
OlfactoryBulb4.6
Ovary4.05
Pancreas5
PancreaticIslet9
ParietalLobe8.6
Pituitary7.15
Placenta6.15
Pons5.95
PrefrontalCortex7
Prostate30.05
Salivarygland4.95
SkeletalMuscle7.4
Skin6.15
SmoothMuscle6.95
Spinalcord6.65
SubthalamicNucleus5.75
SuperiorCervicalGanglion7.1
TemporalLobe5.5
Testis5.3
TestisGermCell4.85
TestisIntersitial4.9
TestisLeydigCell6.05
TestisSeminiferousTubule5.4
Thalamus6.3
Thymus6.95
Thyroid16.45
Tongue7.55
Tonsil6.05
Trachea5.25
TrigeminalGanglion6.35
Uterus5.2
UterusCorpus6.9
WholeBlood5.35
Wholebrain5.7
colon6.2
pineal_day9.42
pineal_night12.58
retina9.6
small_intestine5.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P28476
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.96 ± 0.69
Basal Forebrain2.39 ± 0.24
Basal Part of Pons2.73 ± 0.48
Cerebellar Cortex3.29 ± 0.44
Cerebellar Nuclei2.64 ± 0.58
Claustrum3.05 ± 0.65
Epithalamus2.68 ± 0.55
Frontal Lobe2.88 ± 0.6
Globus Pallidus2.72 ± 0.79
Hypothalamus2.78 ± 0.61
Insula2.45 ± 0.83
Limbic Lobe2.85 ± 0.72
Mesencephalon2.78 ± 0.59
Myelencephalon2.83 ± 0.76
Occipital Lobe2.69 ± 0.73
Parietal Lobe2.48 ± 0.75
Pontine Tegmentum2.74 ± 0.81
Striatum2.85 ± 0.8
Subthalamus2.59 ± 0.75
Temporal Lobe2.66 ± 0.74
Thalamus2.67 ± 0.67
White Matter2.41 ± 0.81
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cog7CBCerebellum15.33
17.82
Cog7CTXCerebral cortex19.84
13.6
Cog7HIPHippocampal region17.68
18.19
Cog7HPFHippocampal formation22.23
19.95
Cog7HYHypothalamus6.7
4.8
Cog7LSXLateral septal complex5.54
3.39
Cog7MBMidbrain10.21
9.02
Cog7MYMedulla24.26
26.83
Cog7OLFOlfactory bulb14.82
11.06
Cog7PPons10.96
11.78
Cog7PALPallidum9.65
8.89
Cog7RHPRetrohippocampal region30.73
23.09
Cog7sAMYStriatum-like amygdalar nuclei7.89
6.05
Cog7STRStriatum7.9
5.9
Cog7STRdStriatum dorsal region8.65
6.7
Cog7STRvStriatum ventral region4.89
2.98
Cog7THThalamus10.97
9.23
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00077627 14 509 522 SLAGFQESILTDKK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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