AutismKB 2.0

Annotation Detail for SNX29


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Basic Information Top
Gene Symbol:SNX29 ( A-388D4.1,FLJ00143 )
Gene Full Name: sorting nexin 29
Band: 16p13.13-p13.12
Quick LinksEntrez ID:92017; OMIM: NA; Uniprot ID:SNX29_HUMAN; ENSEMBL ID: ENSG00000048471; HGNC ID: 30542
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus20 / 56401235
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult51 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor6 / 26384522
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia7 / 9584273
liver tumor0 / 963590 
lung tumor3 / 10312729
lymphoma6 / 7175583
non-neoplasia2 / 9725020
normal129 / 336030738
ovarian tumor2 / 7668226
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone0 / 716550 
bone marrow1 / 4880120
brain16 / 110098914
cervix0 / 481710 
connective tissue4 / 14925526
ear2 / 16212123
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye20 / 21105494
heart3 / 8962633
intestine4 / 23447217
kidney7 / 21177733
larynx1 / 2414541
liver0 / 2077430 
lung5 / 33697414
lymph6 / 44270135
lymph node28 / 91610305
mammary gland1 / 1532716
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary3 / 10205129
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta8 / 28082528
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen1 / 5395218
stomach0 / 966190 
testis8 / 33044224
thymus4 / 8113149
thyroid0 / 474730 
tonsil3 / 16999176
trachea0 / 524130 
umbilical cord0 / 136800 
uterus10 / 23287842
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: Primary tumors (U95A)
  • Affymatrix Probe ID: 35483_at
Cell line Expression level Expression bar
Pr1T2.601
Pr4T2.928
Pr5T2.726
Pr7T2.761
Pr1N2.872
Pr5N2.797
Pr6T3.217
Pr3N2.793
Pr3T2.892
Pr4N2.794
Pr2N2.765
Pr8N2.75
Pr8T2.981
Pr9N2.826
Pr10N2.839
Pr10T2.928
Pr9T2.817
Pr11T2.858
Pr12T2.787
Pr13AT2.922
Pr13BT2.867
Pr21T2.778
Pr22T2.881
Pr30T3.117
Pr23T3.102
Pr19T2.966
Pr26T2.933
Pr31T2.92
Pr16T2.927
Pr17T2.938
Pr24T2.756
Pr27T2.805
Pr29T2.713
OVR1022.946
HUOVR2.795
G23.153
G33.05
G52.882
G62.971
G82.726
G92.933
CO7T3.037
CO8T2.787
CO15T3.115
CO27T3.048
CO30T3.114
CO32T2.961
CO40T2.911
CO52N3.369
CO62N3.162
K12.811
K22.864
K32.701
K42.881
K14N3.342
K162.979
K173.304
K192.933
K202.944
K222.986
CO9T2.904
CO20T3.146
CO24T3.031
CO36N3.228
K182.874
P1N2.83
P2N3.028
P5N3.139
P82.933
P112.635
P173.035
K213.049
K25N3.166
K28N3.131
CO42T3.045
P222.699
P13N2.894
LU11T2.946
LU16T3.561
LU7T3.029
LU8T2.826
LU12T2.996
LU13T3.002
LU5T3.011
LU6T3.241
LU14T3.04
LU17T3.079
LU50N2.772
LU52N3.046
LU18T2.96
LU55N2.928
LU3N3.085
P16B3.381
P232.744
OVR162.878
OVR192.809
OVR272.847
OVR282.771
OVR278E3.008
OVR22.909
OVR52.766
OVR83.019
OVR112.976
OVR122.984
OVR132.778
OVR223.012
OVR262.975
OVR103.118
OVR278S3.073
OVR12.936
LU19T2.953
LU20T2.961
LU24T2.972
LU25T3.013
LU31T3.286
LU34T3.164
LU39T2.729
CO14T3.057
CO21T3.248
CO23T3.087
CO41N2.874
LU40T3.138
LU41T2.758
LU44T3.039
LU46T2.994
LU49T2.966
L5N3.041
LU42T3.009
LU30T3.022
LU43T3.272
CO5T2.93
CO44T2.876
CO49T3.035
CO51T3.051
CO56T2.864
CO61T2.869
LU26T2.99
LU33T3.17
LU36T2.901
CO43T3.096
G183.185
G462.986
L11T3.225
L13N3.141
L30T3.248
L31T3.148
L32T3.365
L34T3.245
L35T3.293
B1N3.198
B5N2.941
B8T2.951
B10T2.936
B14T3.233
B16T2.952
B17T2.993
B1NR3.098
B20T3.46
B51NR3.037
B6T3.508
B15T3.591
B21T3.562
B29T3.047
B31T3.189
B32T3.275
B24T2.947
B46T2.846
B34T2.982
B36T3.031
B37T3.153
B38T3.038
B39T2.831
X1023.001
X116_023.071
G2802.813
X462.903
X582.903
G1863.131
G2962.981
L38T3.024
L31T.22.916
L26N3.093
N257ANTR2.981
N285BODY2.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P367816
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.65 ± 0.38
Basal Forebrain7.35 ± 0.23
Basal Part of Pons7.11 ± 0.27
Cerebellar Cortex7.09 ± 0.11
Cerebellar Nuclei7.76 ± 0.27
Claustrum6.82 ± 0.23
Epithalamus7.2 ± 0.23
Frontal Lobe7.25 ± 0.35
Globus Pallidus8.28 ± 0.23
Hypothalamus7.21 ± 0.26
Insula7.18 ± 0.14
Limbic Lobe7.03 ± 0.29
Mesencephalon7.29 ± 0.37
Myelencephalon7.22 ± 0.35
Occipital Lobe7.09 ± 0.25
Parietal Lobe7.15 ± 0.32
Pontine Tegmentum7.35 ± 0.3
Striatum7.54 ± 0.32
Subthalamus7.46 ± 0.14
Temporal Lobe7.12 ± 0.25
Thalamus7.52 ± 0.3
White Matter8.6 ± 0.29
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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