AutismKB 2.0

Annotation Detail for ZMYM3


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Basic Information Top
Gene Symbol:ZMYM3 ( DXS6673E,KIAA0385,MYM,XFIM,ZNF198L2,ZNF261 )
Gene Full Name: zinc finger, MYM-type 3
Band: Xq13.1
Quick LinksEntrez ID:9203; OMIM: 300061; Uniprot ID:ZMYM3_HUMAN; ENSEMBL ID: ENSG00000147130; HGNC ID: 13054
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body10 / 70761141
blastocyst11 / 62319176
fetus32 / 56401256
neonate3 / 3109796
infant2 / 2362084
juvenile4 / 5555671
adult95 / 193912148
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor8 / 9417884
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor26 / 26384598
glioma4 / 10688337
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia5 / 9584252
liver tumor2 / 9635920
lung tumor5 / 10312748
lymphoma4 / 7175555
non-neoplasia3 / 9725030
normal146 / 336030743
ovarian tumor13 / 76682169
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer4 / 10268038
retinoblastoma3 / 4635664
skin tumor2 / 12494916
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder1 / 2975733
blood5 / 12347840
bone3 / 7165541
bone marrow1 / 4880120
brain47 / 110098942
cervix2 / 4817141
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue25 / 215722115
esophagus0 / 202090 
eye12 / 21105456
heart3 / 8962633
intestine6 / 23447225
kidney8 / 21177737
larynx1 / 2414541
liver8 / 20774338
lung16 / 33697447
lymph2 / 4427045
lymph node4 / 9161043
mammary gland9 / 15327158
mouth1 / 6705214
muscle11 / 107715102
nerve0 / 157680 
ovary18 / 102051176
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta8 / 28082528
prostate12 / 18934563
salivary gland1 / 2015549
skin3 / 21057414
spleen4 / 5395274
stomach3 / 9661931
testis22 / 33044266
thymus7 / 8113186
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord2 / 13680146
uterus11 / 23287847
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207559_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts166.95
Adipocyte24.7
AdrenalCortex33.15
Adrenalgland27.7
Amygdala40.85
Appendix32.75
AtrioventricularNode23.55
BDCA4+_DentriticCells31.8
Bonemarrow29.6
BronchialEpithelialCells21.4
CD105+_Endothelial30.2
CD14+_Monocytes31.15
CD19+_BCells(neg._sel.)29.55
CD33+_Myeloid34.6
CD34+50.3
CD4+_Tcells49.75
CD56+_NKCells34.35
CD71+_EarlyErythroid24.7
CD8+_Tcells52.8
CardiacMyocytes34.05
Caudatenucleus29.45
Cerebellum25.05
CerebellumPeduncles34.55
CiliaryGanglion20.65
CingulateCortex48.1
Colorectaladenocarcinoma30.9
DorsalRootGanglion22.9
FetalThyroid29.45
Fetalbrain40.15
Fetalliver26.7
Fetallung23.55
GlobusPallidus25.65
Heart37.8
Hypothalamus66.3
Kidney25.6
Leukemia_chronicMyelogenousK-56227.75
Leukemia_promyelocytic-HL-6030.15
Leukemialymphoblastic(MOLT-4)34.25
Liver34.45
Lung30.65
Lymphnode25.3
Lymphoma_burkitts(Daudi)61.7
Lymphoma_burkitts(Raji)64.8
MedullaOblongata33.8
OccipitalLobe30.3
OlfactoryBulb27.35
Ovary20.15
Pancreas22.15
PancreaticIslet30.95
ParietalLobe36.6
Pituitary40.8
Placenta28.15
Pons46.4
PrefrontalCortex38.65
Prostate35.6
Salivarygland24.75
SkeletalMuscle36.2
Skin23.2
SmoothMuscle30.15
Spinalcord38.25
SubthalamicNucleus31.7
SuperiorCervicalGanglion35.8
TemporalLobe31.7
Testis35.55
TestisGermCell34.45
TestisIntersitial28
TestisLeydigCell28.8
TestisSeminiferousTubule27.9
Thalamus31.7
Thymus36.95
Thyroid36
Tongue29.35
Tonsil29.1
Trachea25.8
TrigeminalGanglion31.65
Uterus24
UterusCorpus27.45
WholeBlood17.7
Wholebrain24.45
colon28.5
pineal_day58.9
pineal_night40.4
retina37.725
small_intestine26.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P16815
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.01 ± 0.39
Basal Forebrain6.47 ± 0.16
Basal Part of Pons6.4 ± 0.28
Cerebellar Cortex6.22 ± 0.21
Cerebellar Nuclei6.01 ± 0.38
Claustrum6.95 ± 0.44
Epithalamus6.67 ± 0.32
Frontal Lobe6.37 ± 0.36
Globus Pallidus6.2 ± 0.4
Hypothalamus6.64 ± 0.37
Insula6.55 ± 0.3
Limbic Lobe6.87 ± 0.37
Mesencephalon6.43 ± 0.47
Myelencephalon6.56 ± 0.38
Occipital Lobe6.73 ± 0.36
Parietal Lobe6.48 ± 0.39
Pontine Tegmentum6.52 ± 0.38
Striatum7.17 ± 0.27
Subthalamus6.34 ± 0.2
Temporal Lobe6.6 ± 0.33
Thalamus6.32 ± 0.31
White Matter6.41 ± 0.6
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zmym3CBCerebellum56.01
65.89
Zmym3CTXCerebral cortex100
79.29
Zmym3HIPHippocampal region72.06
100
Zmym3HPFHippocampal formation83.59
96.86
Zmym3HYHypothalamus100
100
Zmym3LSXLateral septal complex100
100
Zmym3MBMidbrain90.88
82.54
Zmym3MYMedulla69.15
67.15
Zmym3OLFOlfactory bulb100
100
Zmym3PPons69.43
63.51
Zmym3PALPallidum100
92.77
Zmym3RHPRetrohippocampal region100
87.4
Zmym3sAMYStriatum-like amygdalar nuclei100
100
Zmym3STRStriatum100
93.29
Zmym3STRdStriatum dorsal region100
82.49
Zmym3STRvStriatum ventral region100
100
Zmym3THThalamus80.39
69.92
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00078827 16 462 477 TGSPGPELLFHEGQQK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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