AutismKB 2.0

Annotation Detail for CDHR1


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Basic Information Top
Gene Symbol:CDHR1 ( DKFZp434A132,KIAA1775,PCDH21,PRCAD )
Gene Full Name: cadherin-related family member 1
Band: 10q23.1
Quick LinksEntrez ID:92211; OMIM: 609502; Uniprot ID:CDHR1_HUMAN; ENSEMBL ID: ENSG00000148600; HGNC ID: 14550
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult60 / 193912130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor12 / 114246105
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma3 / 10688328
head and neck tumor4 / 13630229
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal101 / 336030730
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma7 / 46356151
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain25 / 110098922
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye48 / 211054227
heart0 / 896260 
intestine19 / 23447281
kidney4 / 21177718
larynx0 / 241450 
liver0 / 2077430 
lung3 / 3369748
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth3 / 6705244
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin22 / 210574104
spleen1 / 5395218
stomach0 / 966190 
testis0 / 3304420 
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213369_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.5
Adipocyte4.45
AdrenalCortex4.85
Adrenalgland3.8
Amygdala4.65
Appendix6.9
AtrioventricularNode3.55
BDCA4+_DentriticCells4.85
Bonemarrow4.45
BronchialEpithelialCells4.6
CD105+_Endothelial4.45
CD14+_Monocytes4.75
CD19+_BCells(neg._sel.)4.7
CD33+_Myeloid5.55
CD34+5.6
CD4+_Tcells4.85
CD56+_NKCells5.7
CD71+_EarlyErythroid4.35
CD8+_Tcells4.25
CardiacMyocytes5.65
Caudatenucleus6.75
Cerebellum3.65
CerebellumPeduncles5.25
CiliaryGanglion3.25
CingulateCortex4.6
Colorectaladenocarcinoma4.5
DorsalRootGanglion3.5
FetalThyroid4.4
Fetalbrain4.45
Fetalliver3.9
Fetallung3.65
GlobusPallidus3.35
Heart5.9
Hypothalamus4.95
Kidney3.6
Leukemia_chronicMyelogenousK-5624.05
Leukemia_promyelocytic-HL-603.95
Leukemialymphoblastic(MOLT-4)3.6
Liver5.95
Lung4.9
Lymphnode3.85
Lymphoma_burkitts(Daudi)5.8
Lymphoma_burkitts(Raji)6.55
MedullaOblongata4.7
OccipitalLobe4
OlfactoryBulb3.55
Ovary2.95
Pancreas3.65
PancreaticIslet4.85
ParietalLobe4.8
Pituitary5.2
Placenta4.55
Pons4.3
PrefrontalCortex5.55
Prostate6.1
Salivarygland3.65
SkeletalMuscle5.35
Skin12
SmoothMuscle5.05
Spinalcord4.8
SubthalamicNucleus4.15
SuperiorCervicalGanglion5.2
TemporalLobe4.1
Testis3.85
TestisGermCell3.7
TestisIntersitial3.8
TestisLeydigCell4.5
TestisSeminiferousTubule3.85
Thalamus4.55
Thymus3.55
Thyroid5.55
Tongue6.55
Tonsil4.35
Trachea3.75
TrigeminalGanglion4.6
Uterus3.7
UterusCorpus4.7
WholeBlood4.85
Wholebrain3.75
colon9
pineal_day548.2
pineal_night568.86
retina111.375
small_intestine4.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_4845_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.77 ± 1.07
Basal Forebrain2.41 ± 0.45
Basal Part of Pons2.45 ± 0.58
Cerebellar Cortex2.07 ± 0.54
Cerebellar Nuclei2.79 ± 0.59
Claustrum3.05 ± 0.61
Epithalamus2.19 ± 0.85
Frontal Lobe2.42 ± 0.66
Globus Pallidus2.51 ± 0.41
Hypothalamus2.45 ± 0.87
Insula2.48 ± 0.94
Limbic Lobe2.58 ± 0.69
Mesencephalon2.62 ± 0.8
Myelencephalon2.5 ± 0.65
Occipital Lobe2.44 ± 0.61
Parietal Lobe2.46 ± 0.82
Pontine Tegmentum2.54 ± 0.84
Striatum3.63 ± 0.65
Subthalamus3.3 ± 0.39
Temporal Lobe2.26 ± 0.73
Thalamus2.4 ± 0.75
White Matter2.84 ± 0.67
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pcdh21CBCerebellum28.69
46.67
Pcdh21CTXCerebral cortex20.85
17.19
Pcdh21HIPHippocampal region16.48
24.22
Pcdh21HPFHippocampal formation21.73
26.36
Pcdh21HYHypothalamus21.07
21.13
Pcdh21LSXLateral septal complex7.01
6.83
Pcdh21MBMidbrain14.5
15.04
Pcdh21MYMedulla32.2
44.12
Pcdh21OLFOlfactory bulb73.88
100
Pcdh21PPons18.38
22.32
Pcdh21PALPallidum18.62
19.63
Pcdh21RHPRetrohippocampal region30.32
29.9
Pcdh21sAMYStriatum-like amygdalar nuclei22.86
20.54
Pcdh21STRStriatum13.43
11.18
Pcdh21STRdStriatum dorsal region9.14
6.76
Pcdh21STRvStriatum ventral region25.57
21.68
Pcdh21THThalamus21.2
22.91
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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