Annotation Detail for RCSD1
Basic Information Top
| Gene Symbol: | RCSD1 ( CAPZIP,MGC126585,MGC126611,MGC21854,MK2S4 ) |
|---|---|
| Gene Full Name: | RCSD domain containing 1 |
| Band: | 1q24.2 |
| Quick Links | Entrez ID:92241; OMIM: 610579; Uniprot ID:CPZIP_HUMAN; ENSEMBL ID: ENSG00000198771; HGNC ID: 28310 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.493867
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 20 / 564012 | 35 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 |  |
| adult | 47 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 21 / 95842 | 219 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 15 / 71755 | 209 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 84 / 3360307 | 24 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 14 / 123478 | 113 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 8 / 1100989 | 7 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 3 / 89626 | 33 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 8 / 336974 | 23 | |
| lymph | 9 / 44270 | 203 | |
| lymph node | 24 / 91610 | 261 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 5 / 16999 | 294 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: CUST_9986_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.29 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.15 ± 0.45 | |
| Basal Part of Pons | 5.16 ± 0.41 | |
| Cerebellar Cortex | 4.83 ± 0.45 | |
| Cerebellar Nuclei | 5.34 ± 0.45 | |
| Claustrum | 5.09 ± 0.73 | |
| Epithalamus | 4.72 ± 0.39 | |
| Frontal Lobe | 5.05 ± 0.54 | |
| Globus Pallidus | 5.58 ± 0.43 | |
| Hypothalamus | 5.01 ± 0.51 | |
| Insula | 5.04 ± 0.29 | |
| Limbic Lobe | 5.13 ± 0.56 | |
| Mesencephalon | 5.25 ± 0.51 | |
| Myelencephalon | 5.19 ± 0.46 | |
| Occipital Lobe | 5.21 ± 0.54 | |
| Parietal Lobe | 5.25 ± 0.51 | |
| Pontine Tegmentum | 5.08 ± 0.64 | |
| Striatum | 5.61 ± 0.43 | |
| Subthalamus | 5.32 ± 0.29 | |
| Temporal Lobe | 5.24 ± 0.5 | |
| Thalamus | 5.13 ± 0.47 | |
| White Matter | 5.05 ± 0.25 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rcsd1 | CB | Cerebellum | 10.56 | |
| 11.51 | | |||
| Rcsd1 | CTX | Cerebral cortex | 23.65 | |
| 15.33 | | |||
| Rcsd1 | HIP | Hippocampal region | 14.7 | |
| 12.79 | | |||
| Rcsd1 | HPF | Hippocampal formation | 19.15 | |
| 14.91 | | |||
| Rcsd1 | HY | Hypothalamus | 12.03 | |
| 8.48 | | |||
| Rcsd1 | LSX | Lateral septal complex | 12.72 | |
| 9.87 | | |||
| Rcsd1 | MB | Midbrain | 10.54 | |
| 9.82 | | |||
| Rcsd1 | MY | Medulla | 20.75 | |
| 19.67 | | |||
| Rcsd1 | OLF | Olfactory bulb | 33.82 | |
| 25.14 | | |||
| Rcsd1 | P | Pons | 17.04 | |
| 16.93 | | |||
| Rcsd1 | PAL | Pallidum | 11.86 | |
| 9.47 | | |||
| Rcsd1 | RHP | Retrohippocampal region | 27.26 | |
| 18.53 | | |||
| Rcsd1 | sAMY | Striatum-like amygdalar nuclei | 20.03 | |
| 13.36 | | |||
| Rcsd1 | STR | Striatum | 13.95 | |
| 9.41 | | |||
| Rcsd1 | STRd | Striatum dorsal region | 11.64 | |
| 7.41 | | |||
| Rcsd1 | STRv | Striatum ventral region | 18.69 | |
| 12.75 | | |||
| Rcsd1 | TH | Thalamus | 41.92 | |
| 32 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CPZIP_HUMAN_57 | 20 | 57 | 76 | VDLGQNGEEKSPPNASHPPK | PRIDE |
| PAp00007420 | 27 | 132 | 158 | SRPSEAEEVPVSFDQPPEGSHLPCYNK | Peptide Atlas |