AutismKB 2.0

Annotation Detail for GCNT3


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Basic Information Top
Gene Symbol:GCNT3 ( C2/4GnT,C24GNT,C2GNT2,C2GNTM,GNTM )
Gene Full Name: glucosaminyl (N-acetyl) transferase 3, mucin type
Band: 15q22.2
Quick LinksEntrez ID:9245; OMIM: 606836; Uniprot ID:GCNT3_HUMAN; ENSEMBL ID: ENSG00000140297; HGNC ID: 4205
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult34 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor24 / 114246210
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor6 / 26384522
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia1 / 9584210
liver tumor4 / 9635941
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal49 / 336030714
ovarian tumor2 / 7668226
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder2 / 2975767
blood1 / 1234788
bone1 / 7165513
bone marrow0 / 488010 
brain1 / 11009890 
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye5 / 21105423
heart1 / 8962611
intestine53 / 234472226
kidney4 / 21177718
larynx0 / 241450 
liver4 / 20774319
lung9 / 33697426
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary2 / 10205119
pancreas10 / 21481246
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland1 / 2015549
skin0 / 2105740 
spleen0 / 539520 
stomach6 / 9661962
testis4 / 33044212
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea13 / 52413248
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219508_at
Cell line Expression level Expression bar
721_B_lymphoblasts22.05
Adipocyte7.5
AdrenalCortex7.9
Adrenalgland6.35
Amygdala7.6
Appendix9.3
AtrioventricularNode8.15
BDCA4+_DentriticCells8.15
Bonemarrow8.3
BronchialEpithelialCells7.25
CD105+_Endothelial7.4
CD14+_Monocytes7.85
CD19+_BCells(neg._sel.)7.7
CD33+_Myeloid9.45
CD34+9.15
CD4+_Tcells8.25
CD56+_NKCells8.55
CD71+_EarlyErythroid7.05
CD8+_Tcells7.25
CardiacMyocytes9.85
Caudatenucleus6.75
Cerebellum6
CerebellumPeduncles9.1
CiliaryGanglion5.4
CingulateCortex7.7
Colorectaladenocarcinoma7.55
DorsalRootGanglion6.35
FetalThyroid7.4
Fetalbrain7.8
Fetalliver6.6
Fetallung6.2
GlobusPallidus5.9
Heart9.95
Hypothalamus7.65
Kidney6.6
Leukemia_chronicMyelogenousK-5626.8
Leukemia_promyelocytic-HL-606.55
Leukemialymphoblastic(MOLT-4)6.05
Liver11.2
Lung8.2
Lymphnode6.25
Lymphoma_burkitts(Daudi)9.65
Lymphoma_burkitts(Raji)10.6
MedullaOblongata6.9
OccipitalLobe6.8
OlfactoryBulb6
Ovary5.7
Pancreas7.05
PancreaticIslet53.5
ParietalLobe8.15
Pituitary8.85
Placenta7.1
Pons7.5
PrefrontalCortex8.75
Prostate8.75
Salivarygland10.2
SkeletalMuscle9.85
Skin6.4
SmoothMuscle8.4
Spinalcord7.9
SubthalamicNucleus6.95
SuperiorCervicalGanglion11.5
TemporalLobe7.9
Testis6.45
TestisGermCell6.4
TestisIntersitial6.35
TestisLeydigCell7.85
TestisSeminiferousTubule6.5
Thalamus7.7
Thymus5.7
Thyroid9.5
Tongue7.45
Tonsil7.65
Trachea116.45
TrigeminalGanglion9.2
Uterus6.15
UterusCorpus6.85
WholeBlood8.05
Wholebrain6
colon252.95
pineal_day8.92
pineal_night8.64
retina9
small_intestine51
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P420209
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.97 ± 1.01
Basal Forebrain1.48 ± 0.19
Basal Part of Pons1.16 ± 0.31
Cerebellar Cortex1.31 ± 0.6
Cerebellar Nuclei1.78 ± 0.77
Claustrum2.43 ± 0.9
Epithalamus1.33 ± 0.84
Frontal Lobe1.34 ± 0.55
Globus Pallidus2.35 ± 0.72
Hypothalamus1.71 ± 0.86
Insula1.35 ± 0.48
Limbic Lobe1.52 ± 0.65
Mesencephalon1.76 ± 0.67
Myelencephalon1.54 ± 0.67
Occipital Lobe1.78 ± 1.13
Parietal Lobe1.49 ± 0.68
Pontine Tegmentum1.55 ± 0.71
Striatum1.61 ± 0.46
Subthalamus1.59 ± 0.6
Temporal Lobe1.42 ± 0.64
Thalamus1.51 ± 0.6
White Matter2.21 ± 0.67
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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