Annotation Detail for DHRS3
Basic Information Top
Gene Symbol: | DHRS3 ( RDH17,Rsdr1,SDR1,SDR16C1,retSDR1 ) |
---|---|
Gene Full Name: | dehydrogenase/reductase (SDR family) member 3 |
Band: | 1p36.21 |
Quick Links | Entrez ID:9249; OMIM: 612830; Uniprot ID:DHRS3_HUMAN; ENSEMBL ID: ENSG00000162496; HGNC ID: 17693 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.289347
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 2 / 70761 | 28 | |
blastocyst | 2 / 62319 | 32 | |
fetus | 26 / 564012 | 46 | |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 1 / 55556 | 17 | |
adult | 131 / 1939121 | 67 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 1 / 17475 | 57 | |
breast (mammary gland) tumor | 4 / 94178 | 42 | |
cervical tumor | 6 / 34366 | 174 | |
chondrosarcoma | 6 / 82823 | 72 | |
colorectal tumor | 11 / 114246 | 96 | |
esophageal tumor | 1 / 17290 | 57 | |
gastrointestinal tumor | 6 / 119369 | 50 | |
germ cell tumor | 7 / 263845 | 26 | |
glioma | 5 / 106883 | 46 | |
head and neck tumor | 8 / 136302 | 58 | |
kidney tumor | 2 / 68959 | 29 | |
leukemia | 1 / 95842 | 10 | |
liver tumor | 8 / 96359 | 83 | |
lung tumor | 11 / 103127 | 106 | |
lymphoma | 1 / 71755 | 13 | |
non-neoplasia | 5 / 97250 | 51 | |
normal | 139 / 3360307 | 41 | |
ovarian tumor | 14 / 76682 | 182 | |
pancreatic tumor | 8 / 104616 | 76 | |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 4 / 102680 | 38 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 3 / 124949 | 24 | |
soft tissue/muscle tissue tumor | 9 / 125191 | 71 | |
uterine tumor | 12 / 90257 | 132 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 8 / 13106 | 610 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 1 / 40015 | 24 | |
bladder | 2 / 29757 | 67 | |
blood | 1 / 123478 | 8 | |
bone | 4 / 71655 | 55 | |
bone marrow | 2 / 48801 | 40 | |
brain | 25 / 1100989 | 22 | |
cervix | 9 / 48171 | 186 | |
connective tissue | 10 / 149255 | 66 | |
ear | 1 / 16212 | 61 | |
embryonic tissue | 4 / 215722 | 18 | |
esophagus | 2 / 20209 | 98 | |
eye | 11 / 211054 | 52 | |
heart | 2 / 89626 | 22 | |
intestine | 20 / 234472 | 85 | |
kidney | 18 / 211777 | 84 | |
larynx | 2 / 24145 | 82 | |
liver | 18 / 207743 | 86 | |
lung | 33 / 336974 | 97 | |
lymph | 0 / 44270 | 0 | |
lymph node | 4 / 91610 | 43 | |
mammary gland | 5 / 153271 | 32 | |
mouth | 2 / 67052 | 29 | |
muscle | 2 / 107715 | 18 | |
nerve | 1 / 15768 | 63 | |
ovary | 14 / 102051 | 137 | |
pancreas | 9 / 214812 | 41 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 1 / 16585 | 60 | |
placenta | 6 / 280825 | 21 | |
prostate | 21 / 189345 | 110 | |
salivary gland | 0 / 20155 | 0 | |
skin | 4 / 210574 | 18 | |
spleen | 1 / 53952 | 18 | |
stomach | 5 / 96619 | 51 | |
testis | 5 / 330442 | 15 | |
thymus | 2 / 81131 | 24 | |
thyroid | 6 / 47473 | 126 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 18 / 232878 | 77 | |
vascular | 6 / 51780 | 115 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 202481_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 23 | |
Adipocyte | 358.35 | |
AdrenalCortex | 56.3 | |
Adrenalgland | 99.25 | |
Amygdala | 28.55 | |
Appendix | 162.5 | |
AtrioventricularNode | 79.45 | |
BDCA4+_DentriticCells | 23.85 | |
Bonemarrow | 82.4 | |
BronchialEpithelialCells | 76.65 | |
CD105+_Endothelial | 78.4 | |
CD14+_Monocytes | 14.75 | |
CD19+_BCells(neg._sel.) | 39.4 | |
CD33+_Myeloid | 25.9 | |
CD34+ | 48.65 | |
CD4+_Tcells | 77.05 | |
CD56+_NKCells | 375.15 | |
CD71+_EarlyErythroid | 81.85 | |
CD8+_Tcells | 91.4 | |
CardiacMyocytes | 890.6 | |
Caudatenucleus | 41.5 | |
Cerebellum | 43.55 | |
CerebellumPeduncles | 66.8 | |
CiliaryGanglion | 93.9 | |
CingulateCortex | 64.75 | |
Colorectaladenocarcinoma | 64.2 | |
DorsalRootGanglion | 101.6 | |
FetalThyroid | 272.9 | |
Fetalbrain | 30.85 | |
Fetalliver | 129.5 | |
Fetallung | 240.45 | |
GlobusPallidus | 34.45 | |
Heart | 639.45 | |
Hypothalamus | 48.55 | |
Kidney | 245.05 | |
Leukemia_chronicMyelogenousK-562 | 254.05 | |
Leukemia_promyelocytic-HL-60 | 40.25 | |
Leukemialymphoblastic(MOLT-4) | 42.85 | |
Liver | 2383.95 | |
Lung | 503.9 | |
Lymphnode | 113 | |
Lymphoma_burkitts(Daudi) | 64.95 | |
Lymphoma_burkitts(Raji) | 36.6 | |
MedullaOblongata | 55.8 | |
OccipitalLobe | 29.6 | |
OlfactoryBulb | 738.75 | |
Ovary | 34 | |
Pancreas | 138.95 | |
PancreaticIslet | 267.1 | |
ParietalLobe | 62.7 | |
Pituitary | 281.85 | |
Placenta | 196.6 | |
Pons | 64.75 | |
PrefrontalCortex | 72.9 | |
Prostate | 682.75 | |
Salivarygland | 86.15 | |
SkeletalMuscle | 73 | |
Skin | 56.5 | |
SmoothMuscle | 1689.9 | |
Spinalcord | 182 | |
SubthalamicNucleus | 63.9 | |
SuperiorCervicalGanglion | 129.85 | |
TemporalLobe | 85.2 | |
Testis | 48.4 | |
TestisGermCell | 24.45 | |
TestisIntersitial | 37.25 | |
TestisLeydigCell | 46.25 | |
TestisSeminiferousTubule | 38.25 | |
Thalamus | 60.4 | |
Thymus | 92.05 | |
Thyroid | 175.6 | |
Tongue | 100.05 | |
Tonsil | 44.65 | |
Trachea | 188.4 | |
TrigeminalGanglion | 59.4 | |
Uterus | 78.2 | |
UterusCorpus | 198.65 | |
WholeBlood | 40.45 | |
Wholebrain | 83.05 | |
colon | 51.5 | |
pineal_day | 81.6 | |
pineal_night | 49.82 | |
retina | 241.725 | |
small_intestine | 76.05 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_23_P33759
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 8.36 ± 0.23 | |
Basal Forebrain | 8.1 ± 0.41 | |
Basal Part of Pons | 7.19 ± 0.42 | |
Cerebellar Cortex | 7.47 ± 0.25 | |
Cerebellar Nuclei | 7.52 ± 0.18 | |
Claustrum | 8.49 ± 0.33 | |
Epithalamus | 9.02 ± 0.7 | |
Frontal Lobe | 8.01 ± 0.51 | |
Globus Pallidus | 9.15 ± 0.35 | |
Hypothalamus | 8.37 ± 0.26 | |
Insula | 7.78 ± 0.33 | |
Limbic Lobe | 8.03 ± 0.67 | |
Mesencephalon | 8.2 ± 0.66 | |
Myelencephalon | 8.18 ± 0.5 | |
Occipital Lobe | 8.27 ± 0.35 | |
Parietal Lobe | 8.11 ± 0.43 | |
Pontine Tegmentum | 8.06 ± 0.41 | |
Striatum | 8.99 ± 0.37 | |
Subthalamus | 7.65 ± 0.59 | |
Temporal Lobe | 7.88 ± 0.38 | |
Thalamus | 8.16 ± 0.39 | |
White Matter | 7.48 ± 0.48 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Dhrs3 | CB | Cerebellum | 36.83 | |
42.79 | ||||
Dhrs3 | CTX | Cerebral cortex | 45.45 | |
27.06 | ||||
Dhrs3 | HIP | Hippocampal region | 32.59 | |
24.2 | ||||
Dhrs3 | HPF | Hippocampal formation | 44.94 | |
32.96 | ||||
Dhrs3 | HY | Hypothalamus | 25.55 | |
14.06 | ||||
Dhrs3 | LSX | Lateral septal complex | 19.72 | |
9.47 | ||||
Dhrs3 | MB | Midbrain | 39.68 | |
25 | ||||
Dhrs3 | MY | Medulla | 41.54 | |
34.41 | ||||
Dhrs3 | OLF | Olfactory bulb | 49.23 | |
27.08 | ||||
Dhrs3 | P | Pons | 51.94 | |
40.22 | ||||
Dhrs3 | PAL | Pallidum | 23.36 | |
14.62 | ||||
Dhrs3 | RHP | Retrohippocampal region | 50.33 | |
44.31 | ||||
Dhrs3 | sAMY | Striatum-like amygdalar nuclei | 33.81 | |
17.41 | ||||
Dhrs3 | STR | Striatum | 19.76 | |
10.4 | ||||
Dhrs3 | STRd | Striatum dorsal region | 17.34 | |
9.11 | ||||
Dhrs3 | STRv | Striatum ventral region | 19.28 | |
10.49 | ||||
Dhrs3 | TH | Thalamus | 33.3 | |
19.62 |