AutismKB 2.0

Annotation Detail for CCDC64


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Basic Information Top
Gene Symbol:CCDC64 ( BICDR-1,FLJ26450,H_267D11.1 )
Gene Full Name: coiled-coil domain containing 64
Band: 12q24.23
Quick LinksEntrez ID:92558; OMIM: NA; Uniprot ID:BICR1_HUMAN; ENSEMBL ID: ENSG00000135127; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult50 / 193912125
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor8 / 26384530
glioma0 / 1068830 
head and neck tumor4 / 13630229
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor4 / 10312738
lymphoma2 / 7175527
non-neoplasia4 / 9725041
normal57 / 336030716
ovarian tumor5 / 7668265
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain10 / 11009899
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye12 / 21105456
heart1 / 8962611
intestine3 / 23447212
kidney11 / 21177751
larynx2 / 2414582
liver0 / 2077430 
lung9 / 33697426
lymph2 / 4427045
lymph node0 / 916100 
mammary gland3 / 15327119
mouth1 / 6705214
muscle0 / 1077150 
nerve4 / 15768253
ovary5 / 10205148
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach1 / 9661910
testis5 / 33044215
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215015_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.7
Adipocyte5.7
AdrenalCortex6.15
Adrenalgland4.85
Amygdala6.15
Appendix5.85
AtrioventricularNode4.55
BDCA4+_DentriticCells6.75
Bonemarrow4.55
BronchialEpithelialCells5.65
CD105+_Endothelial6.2
CD14+_Monocytes6.3
CD19+_BCells(neg._sel.)6.25
CD33+_Myeloid7.75
CD34+7.55
CD4+_Tcells14.7
CD56+_NKCells7.25
CD71+_EarlyErythroid5.65
CD8+_Tcells15.85
CardiacMyocytes10.5
Caudatenucleus5.05
Cerebellum4.8
CerebellumPeduncles6.55
CiliaryGanglion4.05
CingulateCortex6.05
Colorectaladenocarcinoma5.95
DorsalRootGanglion5.35
FetalThyroid6.45
Fetalbrain5.95
Fetalliver5
Fetallung4.85
GlobusPallidus4.25
Heart7.65
Hypothalamus6.2
Kidney4.7
Leukemia_chronicMyelogenousK-5628.9
Leukemia_promyelocytic-HL-606.1
Leukemialymphoblastic(MOLT-4)4.55
Liver7.7
Lung6.05
Lymphnode5.05
Lymphoma_burkitts(Daudi)7.45
Lymphoma_burkitts(Raji)8.3
MedullaOblongata5.5
OccipitalLobe5.15
OlfactoryBulb4.65
Ovary3.85
Pancreas4.75
PancreaticIslet6.3
ParietalLobe6.15
Pituitary7.65
Placenta5.6
Pons7.95
PrefrontalCortex7.1
Prostate7.05
Salivarygland6.75
SkeletalMuscle7.85
Skin6.7
SmoothMuscle6.75
Spinalcord6.15
SubthalamicNucleus5.25
SuperiorCervicalGanglion6.8
TemporalLobe5.35
Testis4.85
TestisGermCell5.05
TestisIntersitial5.25
TestisLeydigCell5.85
TestisSeminiferousTubule5.05
Thalamus5.4
Thymus4.4
Thyroid7.5
Tongue5.8
Tonsil6.15
Trachea4.8
TrigeminalGanglion5.85
Uterus7.9
UterusCorpus6.45
WholeBlood6.4
Wholebrain4.75
colon5.95
pineal_day7.48
pineal_night7.64
retina7.65
small_intestine5.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_572_PI416573500
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.47 ± 0.42
Basal Forebrain3.84 ± 0.63
Basal Part of Pons4.06 ± 0.27
Cerebellar Cortex4.43 ± 0.37
Cerebellar Nuclei3.72 ± 0.33
Claustrum4.83 ± 0.55
Epithalamus3.71 ± 0.69
Frontal Lobe4.12 ± 0.45
Globus Pallidus3.57 ± 0.5
Hypothalamus3.98 ± 0.37
Insula4.32 ± 0.44
Limbic Lobe4.57 ± 0.59
Mesencephalon4.17 ± 0.68
Myelencephalon4.22 ± 0.52
Occipital Lobe4.64 ± 0.62
Parietal Lobe4.37 ± 0.6
Pontine Tegmentum4.28 ± 0.61
Striatum3.74 ± 0.68
Subthalamus3.64 ± 0.67
Temporal Lobe4.42 ± 0.5
Thalamus4.28 ± 0.53
White Matter2.57 ± 0.42
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ccdc64CBCerebellum18.62
22.74
Ccdc64CTXCerebral cortex20.03
13.33
Ccdc64HIPHippocampal region12.04
11.21
Ccdc64HPFHippocampal formation12.92
10.76
Ccdc64HYHypothalamus4.05
3.02
Ccdc64LSXLateral septal complex6.6
4.39
Ccdc64MBMidbrain9.22
9.43
Ccdc64MYMedulla16.66
17.2
Ccdc64OLFOlfactory bulb18.53
12.62
Ccdc64PPons9.36
9.45
Ccdc64PALPallidum4.13
3.3
Ccdc64RHPRetrohippocampal region14.96
10.55
Ccdc64sAMYStriatum-like amygdalar nuclei3.81
2.62
Ccdc64STRStriatum3.48
2.64
Ccdc64STRdStriatum dorsal region3.24
2.7
Ccdc64STRvStriatum ventral region3.19
1.98
Ccdc64THThalamus19.22
16.39
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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