AutismKB 2.0

Annotation Detail for CYTH3


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Basic Information Top
Gene Symbol:CYTH3 ( ARNO3,GRP1,PSCD3 )
Gene Full Name: cytohesin 3
Band: 7p22.1
Quick LinksEntrez ID:9265; OMIM: 605081; Uniprot ID:CYH3_HUMAN; ENSEMBL ID: ENSG00000008256; HGNC ID: 9504
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus35 / 56401262
neonate0 / 310970 
infant1 / 2362042
juvenile2 / 5555635
adult121 / 193912162
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma12 / 82823144
colorectal tumor13 / 114246113
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor11 / 26384541
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor4 / 9635941
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal175 / 336030752
ovarian tumor3 / 7668239
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer7 / 10268068
retinoblastoma0 / 463560 
skin tumor11 / 12494988
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites0 / 400150 
bladder1 / 2975733
blood1 / 1234788
bone6 / 7165583
bone marrow0 / 488010 
brain53 / 110098948
cervix0 / 481710 
connective tissue10 / 14925566
ear1 / 1621261
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye10 / 21105447
heart4 / 8962644
intestine18 / 23447276
kidney8 / 21177737
larynx0 / 241450 
liver4 / 20774319
lung7 / 33697420
lymph2 / 4427045
lymph node0 / 916100 
mammary gland3 / 15327119
mouth2 / 6705229
muscle1 / 1077159
nerve0 / 157680 
ovary2 / 10205119
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta51 / 280825181
prostate10 / 18934552
salivary gland0 / 201550 
skin13 / 21057461
spleen1 / 5395218
stomach4 / 9661941
testis12 / 33044236
thymus2 / 8113124
thyroid0 / 474730 
tonsil1 / 1699958
trachea1 / 5241319
umbilical cord0 / 136800 
uterus20 / 23287885
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206523_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.1
Adipocyte4
AdrenalCortex4.65
Adrenalgland3.4
Amygdala4.15
Appendix4.1
AtrioventricularNode3.35
BDCA4+_DentriticCells4.45
Bonemarrow4
BronchialEpithelialCells3.95
CD105+_Endothelial4.15
CD14+_Monocytes4.3
CD19+_BCells(neg._sel.)4.3
CD33+_Myeloid5.2
CD34+5.2
CD4+_Tcells4.4
CD56+_NKCells4.95
CD71+_EarlyErythroid3.85
CD8+_Tcells3.8
CardiacMyocytes6.6
Caudatenucleus3.6
Cerebellum3.3
CerebellumPeduncles4.55
CiliaryGanglion3.4
CingulateCortex4.15
Colorectaladenocarcinoma4.3
DorsalRootGanglion3.25
FetalThyroid3.95
Fetalbrain4.05
Fetalliver3.5
Fetallung3.25
GlobusPallidus3.25
Heart5.5
Hypothalamus4.3
Kidney3.3
Leukemia_chronicMyelogenousK-5623.65
Leukemia_promyelocytic-HL-603.55
Leukemialymphoblastic(MOLT-4)3.2
Liver5.5
Lung4.45
Lymphnode3.4
Lymphoma_burkitts(Daudi)5.15
Lymphoma_burkitts(Raji)5.85
MedullaOblongata3.65
OccipitalLobe3.6
OlfactoryBulb3.2
Ovary2.75
Pancreas3.25
PancreaticIslet4.35
ParietalLobe4.35
Pituitary4.75
Placenta5.4
Pons3.95
PrefrontalCortex5
Prostate4.65
Salivarygland3.4
SkeletalMuscle4.85
Skin3.15
SmoothMuscle4.6
Spinalcord4.3
SubthalamicNucleus3.75
SuperiorCervicalGanglion4.8
TemporalLobe3.75
Testis3.5
TestisGermCell3.25
TestisIntersitial3.5
TestisLeydigCell4.25
TestisSeminiferousTubule3.45
Thalamus4.2
Thymus3.1
Thyroid5
Tongue4.05
Tonsil3.95
Trachea3.4
TrigeminalGanglion4.5
Uterus3.3
UterusCorpus3.65
WholeBlood4.4
Wholebrain3.35
colon4.05
pineal_day5.06
pineal_night5
retina4.925
small_intestine3.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6515_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.28 ± 0.42
Basal Forebrain3.96 ± 0.3
Basal Part of Pons4.1 ± 0.55
Cerebellar Cortex4.16 ± 0.43
Cerebellar Nuclei4.2 ± 0.37
Claustrum3.85 ± 0.79
Epithalamus3.79 ± 0.49
Frontal Lobe4.07 ± 0.5
Globus Pallidus3.85 ± 0.63
Hypothalamus3.89 ± 0.67
Insula4.33 ± 0.63
Limbic Lobe4.38 ± 0.53
Mesencephalon4.07 ± 0.57
Myelencephalon4.1 ± 0.52
Occipital Lobe4.61 ± 0.38
Parietal Lobe4.23 ± 0.42
Pontine Tegmentum4.3 ± 0.53
Striatum4.28 ± 0.5
Subthalamus3.92 ± 1.02
Temporal Lobe4.23 ± 0.49
Thalamus3.92 ± 0.5
White Matter2.86 ± 0.4
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pscd3CBCerebellum18.62
77.84
Pscd3CTXCerebral cortex6.93
5.57
Pscd3HIPHippocampal region13.29
16.56
Pscd3HPFHippocampal formation10.56
11.86
Pscd3HYHypothalamus0.9
0.93
Pscd3LSXLateral septal complex0.81
0.49
Pscd3MBMidbrain4.93
5.76
Pscd3MYMedulla10.79
14.45
Pscd3OLFOlfactory bulb3.48
3.14
Pscd3PPons5.46
6.85
Pscd3PALPallidum2.04
2.79
Pscd3RHPRetrohippocampal region4.9
3.97
Pscd3sAMYStriatum-like amygdalar nuclei1.21
1.22
Pscd3STRStriatum1.53
1.48
Pscd3STRdStriatum dorsal region1.84
1.95
Pscd3STRvStriatum ventral region1.12
0.73
Pscd3THThalamus5.89
6.55
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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