Annotation Detail for ARRDC1
Basic Information Top
| Gene Symbol: | ARRDC1 ( MGC40555 ) |
|---|---|
| Gene Full Name: | arrestin domain containing 1 |
| Band: | 9q34.3 |
| Quick Links | Entrez ID:92714; OMIM: NA; Uniprot ID:ARRD1_HUMAN; ENSEMBL ID: ENSG00000197070; HGNC ID: 28633 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.12999
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 24 / 564012 | 42 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 138 / 1939121 | 71 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 8 / 114246 | 70 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 16 / 95842 | 166 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 13 / 71755 | 181 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 170 / 3360307 | 50 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 13 / 104616 | 124 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 22 / 123478 | 178 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 28 / 1100989 | 25 | |
| cervix | 11 / 48171 | 228 |  |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 11 / 211054 | 52 | |
| heart | 1 / 89626 | 11 | |
| intestine | 21 / 234472 | 89 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 16 / 336974 | 47 | |
| lymph | 5 / 44270 | 112 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 9 / 102051 | 88 | |
| pancreas | 21 / 214812 | 97 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 33 / 280825 | 117 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 8 / 330442 | 24 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P332316
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.02 ± 0.9 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.29 ± 0.3 | |
| Basal Part of Pons | 2.85 ± 0.43 | |
| Cerebellar Cortex | 2.85 ± 0.58 | |
| Cerebellar Nuclei | 2.75 ± 0.61 | |
| Claustrum | 2.77 ± 0.6 | |
| Epithalamus | 2.55 ± 0.55 | |
| Frontal Lobe | 2.8 ± 0.64 | |
| Globus Pallidus | 1.9 ± 0.6 | |
| Hypothalamus | 2.49 ± 0.52 | |
| Insula | 2.66 ± 0.72 | |
| Limbic Lobe | 2.73 ± 0.54 | |
| Mesencephalon | 2.71 ± 0.78 | |
| Myelencephalon | 2.74 ± 0.6 | |
| Occipital Lobe | 2.49 ± 0.57 | |
| Parietal Lobe | 2.6 ± 0.66 | |
| Pontine Tegmentum | 2.65 ± 0.62 | |
| Striatum | 2.69 ± 0.58 | |
| Subthalamus | 2.6 ± 0.74 | |
| Temporal Lobe | 2.8 ± 0.65 | |
| Thalamus | 2.62 ± 0.57 | |
| White Matter | 2.04 ± 0.66 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Arrdc1 | CB | Cerebellum | 5.7 | |
| 5.86 | | |||
| Arrdc1 | CTX | Cerebral cortex | 7.85 | |
| 5.28 | | |||
| Arrdc1 | HIP | Hippocampal region | 7.72 | |
| 6.67 | | |||
| Arrdc1 | HPF | Hippocampal formation | 8.59 | |
| 6.98 | | |||
| Arrdc1 | HY | Hypothalamus | 25.95 | |
| 19.14 | | |||
| Arrdc1 | LSX | Lateral septal complex | 0.27 | |
| 0.22 | | |||
| Arrdc1 | MB | Midbrain | 14.76 | |
| 12.53 | | |||
| Arrdc1 | MY | Medulla | 13.57 | |
| 16.08 | | |||
| Arrdc1 | OLF | Olfactory bulb | 10.13 | |
| 8 | | |||
| Arrdc1 | P | Pons | 25.13 | |
| 26.54 | | |||
| Arrdc1 | PAL | Pallidum | 12.59 | |
| 11.1 | | |||
| Arrdc1 | RHP | Retrohippocampal region | 10.93 | |
| 7.91 | | |||
| Arrdc1 | sAMY | Striatum-like amygdalar nuclei | 14.2 | |
| 10.69 | | |||
| Arrdc1 | STR | Striatum | 4.85 | |
| 3.66 | | |||
| Arrdc1 | STRd | Striatum dorsal region | 2.01 | |
| 1.71 | | |||
| Arrdc1 | STRv | Striatum ventral region | 9.48 | |
| 5.99 | | |||
| Arrdc1 | TH | Thalamus | 15.11 | |
| 11.43 | |