Annotation Detail for SLC38A5
Basic Information Top
| Gene Symbol: | SLC38A5 ( JM24,SN2,SNAT5,pp7194 ) |
|---|---|
| Gene Full Name: | solute carrier family 38, member 5 |
| Band: | Xp11.23 |
| Quick Links | Entrez ID:92745; OMIM: 300649; Uniprot ID:S38A5_HUMAN; ENSEMBL ID: ENSG00000017483; HGNC ID: 18070 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.195155
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 19 / 564012 | 33 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 112 / 1939121 | 57 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 4 / 17475 | 228 |  |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 75 / 136302 | 550 | |
| kidney tumor | 16 / 68959 | 232 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 49 / 3360307 | 14 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 9 / 46356 | 194 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 4 / 29757 | 134 | |
| blood | 5 / 123478 | 40 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 9 / 48171 | 186 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 12 / 211054 | 56 | |
| heart | 0 / 89626 | 0 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 16 / 211777 | 75 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 13 / 336974 | 38 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 75 / 67052 | 1118 |  |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_5980_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.88 ± 0.65 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.1 ± 0.68 | |
| Basal Part of Pons | 5.81 ± 0.58 | |
| Cerebellar Cortex | 5.46 ± 0.73 | |
| Cerebellar Nuclei | 6.01 ± 0.55 | |
| Claustrum | 4.34 ± 0.77 | |
| Epithalamus | 5.19 ± 0.94 | |
| Frontal Lobe | 5.64 ± 0.67 | |
| Globus Pallidus | 5.9 ± 0.41 | |
| Hypothalamus | 5.31 ± 1.07 | |
| Insula | 5.83 ± 0.42 | |
| Limbic Lobe | 5.41 ± 0.73 | |
| Mesencephalon | 5.46 ± 0.85 | |
| Myelencephalon | 5.68 ± 0.74 | |
| Occipital Lobe | 5.87 ± 0.8 | |
| Parietal Lobe | 5.1 ± 0.72 | |
| Pontine Tegmentum | 5.52 ± 0.74 | |
| Striatum | 5.92 ± 0.66 | |
| Subthalamus | 5.6 ± 1 | |
| Temporal Lobe | 5.56 ± 0.61 | |
| Thalamus | 5.98 ± 0.69 | |
| White Matter | 5.01 ± 1.59 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc38a5 | CB | Cerebellum | 4.47 | |
| 6.83 | | |||
| Slc38a5 | CTX | Cerebral cortex | 2.44 | |
| 2.27 | | |||
| Slc38a5 | HIP | Hippocampal region | 4.53 | |
| 4.34 | | |||
| Slc38a5 | HPF | Hippocampal formation | 3.78 | |
| 3.37 | | |||
| Slc38a5 | HY | Hypothalamus | 0.72 | |
| 0.72 | | |||
| Slc38a5 | LSX | Lateral septal complex | 0.45 | |
| 0.33 | | |||
| Slc38a5 | MB | Midbrain | 1.56 | |
| 2.2 | | |||
| Slc38a5 | MY | Medulla | 2.72 | |
| 3.11 | | |||
| Slc38a5 | OLF | Olfactory bulb | 6.19 | |
| 4.41 | | |||
| Slc38a5 | P | Pons | 1.74 | |
| 2.06 | | |||
| Slc38a5 | PAL | Pallidum | 0.46 | |
| 0.47 | | |||
| Slc38a5 | RHP | Retrohippocampal region | 2.5 | |
| 1.9 | | |||
| Slc38a5 | sAMY | Striatum-like amygdalar nuclei | 0.38 | |
| 0.82 | | |||
| Slc38a5 | STR | Striatum | 0.84 | |
| 0.82 | | |||
| Slc38a5 | STRd | Striatum dorsal region | 0.91 | |
| 0.83 | | |||
| Slc38a5 | STRv | Striatum ventral region | 0.89 | |
| 0.82 | | |||
| Slc38a5 | TH | Thalamus | 1.42 | |
| 1.86 | |