Annotation Detail for SHKBP1
Basic Information Top
| Gene Symbol: | SHKBP1 ( Sb1 ) |
|---|---|
| Gene Full Name: | SH3KBP1 binding protein 1 |
| Band: | 19q13.2 |
| Quick Links | Entrez ID:92799; OMIM: NA; Uniprot ID:SHKB1_HUMAN; ENSEMBL ID: ENSG00000160410; HGNC ID: 19214 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.26506
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 5 / 62319 | 80 |  |
| fetus | 12 / 564012 | 21 | |
| neonate | 5 / 31097 | 160 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 20 / 55556 | 359 |  |
| adult | 142 / 1939121 | 73 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 10 / 34366 | 290 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 4 / 17290 | 231 | |
| gastrointestinal tumor | 17 / 119369 | 142 | |
| germ cell tumor | 22 / 263845 | 83 | |
| glioma | 16 / 106883 | 149 | |
| head and neck tumor | 17 / 136302 | 124 | |
| kidney tumor | 9 / 68959 | 130 | |
| leukemia | 30 / 95842 | 313 | |
| liver tumor | 12 / 96359 | 124 | |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 26 / 71755 | 362 | |
| non-neoplasia | 11 / 97250 | 113 | |
| normal | 218 / 3360307 | 64 | |
| ovarian tumor | 20 / 76682 | 260 | |
| pancreatic tumor | 26 / 104616 | 248 | |
| primitive neuroectodermal tumor of the CNS | 37 / 125680 | 294 | |
| prostate cancer | 1 / 102680 | 9 |  |
| retinoblastoma | 5 / 46356 | 107 | |
| skin tumor | 14 / 124949 | 112 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 12 / 90257 | 132 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 10 / 40015 | 249 | |
| bladder | 3 / 29757 | 100 | |
| blood | 32 / 123478 | 259 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 5 / 48801 | 102 | |
| brain | 68 / 1100989 | 61 | |
| cervix | 10 / 48171 | 207 | |
| connective tissue | 17 / 149255 | 113 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 4 / 20209 | 197 | |
| eye | 15 / 211054 | 71 | |
| heart | 3 / 89626 | 33 | |
| intestine | 22 / 234472 | 93 | |
| kidney | 21 / 211777 | 99 | |
| larynx | 1 / 24145 | 41 | |
| liver | 12 / 207743 | 57 | |
| lung | 16 / 336974 | 47 | |
| lymph | 13 / 44270 | 293 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 19 / 102051 | 186 | |
| pancreas | 26 / 214812 | 121 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 21 / 280825 | 74 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 20 / 210574 | 94 | |
| spleen | 21 / 53952 | 389 | |
| stomach | 4 / 96619 | 41 | |
| testis | 22 / 330442 | 66 | |
| thymus | 9 / 81131 | 110 | |
| thyroid | 13 / 47473 | 273 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 25 / 232878 | 107 | |
| vascular | 7 / 51780 | 135 | |
Microarray in - Probe name: CUST_10666_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.84 ± 0.93 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.71 ± 0.59 | |
| Basal Part of Pons | 2.32 ± 0.52 | |
| Cerebellar Cortex | 2.46 ± 0.72 | |
| Cerebellar Nuclei | 2.92 ± 0.56 | |
| Claustrum | 3.29 ± 0.66 | |
| Epithalamus | 2.57 ± 0.65 | |
| Frontal Lobe | 2.69 ± 0.68 | |
| Globus Pallidus | 3.33 ± 0.56 | |
| Hypothalamus | 2.65 ± 0.79 | |
| Insula | 2.47 ± 0.54 | |
| Limbic Lobe | 2.56 ± 0.66 | |
| Mesencephalon | 2.68 ± 0.69 | |
| Myelencephalon | 2.7 ± 0.66 | |
| Occipital Lobe | 2.36 ± 0.87 | |
| Parietal Lobe | 2.66 ± 0.56 | |
| Pontine Tegmentum | 2.79 ± 0.73 | |
| Striatum | 2.71 ± 0.81 | |
| Subthalamus | 2.81 ± 0.41 | |
| Temporal Lobe | 2.66 ± 0.7 | |
| Thalamus | 2.63 ± 0.6 | |
| White Matter | 3.26 ± 0.78 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Shkbp1 | CB | Cerebellum | 21.47 | |
| 24.6 | | |||
| Shkbp1 | CTX | Cerebral cortex | 18.28 | |
| 12 | | |||
| Shkbp1 | HIP | Hippocampal region | 26.46 | |
| 39.87 | | |||
| Shkbp1 | HPF | Hippocampal formation | 22.91 | |
| 28.57 | | |||
| Shkbp1 | HY | Hypothalamus | 18.8 | |
| 12.94 | | |||
| Shkbp1 | LSX | Lateral septal complex | 11.04 | |
| 7.36 | | |||
| Shkbp1 | MB | Midbrain | 18.54 | |
| 15.08 | | |||
| Shkbp1 | MY | Medulla | 19.71 | |
| 18.15 | | |||
| Shkbp1 | OLF | Olfactory bulb | 42.73 | |
| 33.52 | | |||
| Shkbp1 | P | Pons | 23.9 | |
| 21.67 | | |||
| Shkbp1 | PAL | Pallidum | 19.94 | |
| 14.45 | | |||
| Shkbp1 | RHP | Retrohippocampal region | 16.16 | |
| 12.09 | | |||
| Shkbp1 | sAMY | Striatum-like amygdalar nuclei | 19.11 | |
| 12.36 | | |||
| Shkbp1 | STR | Striatum | 28.06 | |
| 17.76 | | |||
| Shkbp1 | STRd | Striatum dorsal region | 23.44 | |
| 14.35 | | |||
| Shkbp1 | STRv | Striatum ventral region | 59.72 | |
| 37.68 | | |||
| Shkbp1 | TH | Thalamus | 13.13 | |
| 9.75 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00003158 | 21 | 88 | 108 | GVHGSSLLHEAQFYGLTPLVR | Peptide Atlas |