AutismKB 2.0

Annotation Detail for CD9


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Basic Information Top
Gene Symbol:CD9 ( 5H9,BA2,BTCC-1,DRAP-27,MIC3,MRP-1,P24,TSPAN29 )
Gene Full Name: CD9 molecule
Band: 12p13.31
Quick LinksEntrez ID:928; OMIM: 143030; Uniprot ID:CD9_HUMAN; ENSEMBL ID: ENSG00000010278; HGNC ID: 1709
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body14 / 70761197
blastocyst4 / 6231964
fetus31 / 56401254
neonate2 / 3109764
infant0 / 236200 
juvenile4 / 5555671
adult334 / 1939121172
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma6 / 17475343
breast (mammary gland) tumor17 / 94178180
cervical tumor4 / 34366116
chondrosarcoma17 / 82823205
colorectal tumor44 / 114246385
esophageal tumor15 / 17290867
gastrointestinal tumor45 / 119369376
germ cell tumor17 / 26384564
glioma11 / 106883102
head and neck tumor33 / 136302242
kidney tumor7 / 68959101
leukemia4 / 9584241
liver tumor11 / 96359114
lung tumor12 / 103127116
lymphoma0 / 717550 
non-neoplasia19 / 97250195
normal421 / 3360307125
ovarian tumor19 / 76682247
pancreatic tumor14 / 104616133
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer17 / 102680165
retinoblastoma1 / 4635621
skin tumor7 / 12494956
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor27 / 90257299
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites18 / 40015449
bladder10 / 29757336
blood2 / 12347816
bone6 / 7165583
bone marrow3 / 4880161
brain102 / 110098992
cervix7 / 48171145
connective tissue26 / 149255174
ear5 / 16212308
embryonic tissue25 / 215722115
esophagus15 / 20209742
eye29 / 211054137
heart8 / 8962689
intestine82 / 234472349
kidney24 / 211777113
larynx7 / 24145289
liver22 / 207743105
lung63 / 336974186
lymph0 / 442700 
lymph node1 / 9161010
mammary gland26 / 153271169
mouth15 / 67052223
muscle19 / 107715176
nerve3 / 15768190
ovary25 / 102051244
pancreas27 / 214812125
parathyroid16 / 20539779
pharynx46 / 413281113
pituitary gland3 / 16585180
placenta4 / 28082514
prostate48 / 189345253
salivary gland2 / 2015599
skin50 / 210574237
spleen0 / 539520 
stomach47 / 96619486
testis19 / 33044257
thymus1 / 8113112
thyroid7 / 47473147
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord2 / 13680146
uterus38 / 232878163
vascular11 / 51780212
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201005_at
Cell line Expression level Expression bar
721_B_lymphoblasts328.9
Adipocyte72.35
AdrenalCortex222.75
Adrenalgland246
Amygdala321.7
Appendix203.9
AtrioventricularNode132.55
BDCA4+_DentriticCells15.4
Bonemarrow29.35
BronchialEpithelialCells1549.35
CD105+_Endothelial29.9
CD14+_Monocytes90.3
CD19+_BCells(neg._sel.)33.85
CD33+_Myeloid8.05
CD34+108.45
CD4+_Tcells8.05
CD56+_NKCells8.55
CD71+_EarlyErythroid9.3
CD8+_Tcells7.3
CardiacMyocytes175
Caudatenucleus262.45
Cerebellum50.65
CerebellumPeduncles57.65
CiliaryGanglion183.3
CingulateCortex88.75
Colorectaladenocarcinoma3922.15
DorsalRootGanglion421.3
FetalThyroid501.45
Fetalbrain16.6
Fetalliver13.15
Fetallung562.35
GlobusPallidus18.95
Heart159.95
Hypothalamus596.7
Kidney210.2
Leukemia_chronicMyelogenousK-56222.35
Leukemia_promyelocytic-HL-606.85
Leukemialymphoblastic(MOLT-4)13.95
Liver79.05
Lung1593.6
Lymphnode151.4
Lymphoma_burkitts(Daudi)8.7
Lymphoma_burkitts(Raji)11.2
MedullaOblongata160.55
OccipitalLobe302.55
OlfactoryBulb1584.8
Ovary66.7
Pancreas383.4
PancreaticIslet154.05
ParietalLobe191.5
Pituitary95.15
Placenta146.55
Pons91.2
PrefrontalCortex281.95
Prostate2959.75
Salivarygland684.15
SkeletalMuscle25.05
Skin341.4
SmoothMuscle183.7
Spinalcord687.6
SubthalamicNucleus35.85
SuperiorCervicalGanglion61.9
TemporalLobe25.4
Testis30.25
TestisGermCell82.55
TestisIntersitial15.95
TestisLeydigCell45.75
TestisSeminiferousTubule11.9
Thalamus318.15
Thymus167.65
Thyroid2143.95
Tongue1037.15
Tonsil509.7
Trachea1119.25
TrigeminalGanglion181.25
Uterus769.15
UterusCorpus203.55
WholeBlood128.95
Wholebrain596.65
colon1928.8
pineal_day109.9
pineal_night119.38
retina969.3
small_intestine894.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16939_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.44 ± 0.79
Basal Forebrain3.81 ± 0.64
Basal Part of Pons3.82 ± 0.85
Cerebellar Cortex3.42 ± 0.59
Cerebellar Nuclei4.25 ± 1.04
Claustrum3.78 ± 0.61
Epithalamus5.01 ± 0.59
Frontal Lobe3.83 ± 0.91
Globus Pallidus5.38 ± 0.23
Hypothalamus3.59 ± 0.59
Insula3.11 ± 0.75
Limbic Lobe3.62 ± 0.8
Mesencephalon3.92 ± 0.85
Myelencephalon4.01 ± 0.7
Occipital Lobe4.2 ± 0.77
Parietal Lobe3.82 ± 0.83
Pontine Tegmentum4.21 ± 0.64
Striatum4.92 ± 0.64
Subthalamus3.9 ± 0.54
Temporal Lobe3.76 ± 0.69
Thalamus4.49 ± 0.65
White Matter6.49 ± 0.26
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cd9CBCerebellum26.62
46.12
Cd9CTXCerebral cortex21.63
19.14
Cd9HIPHippocampal region22.63
28.1
Cd9HPFHippocampal formation21.74
24.13
Cd9HYHypothalamus21.14
19.39
Cd9LSXLateral septal complex29.81
30.04
Cd9MBMidbrain27.93
26.28
Cd9MYMedulla23.74
28.64
Cd9OLFOlfactory bulb21.78
21.38
Cd9PPons25.52
22.71
Cd9PALPallidum28.95
27.18
Cd9RHPRetrohippocampal region20.23
18.53
Cd9sAMYStriatum-like amygdalar nuclei22.59
23.99
Cd9STRStriatum27.56
26.27
Cd9STRdStriatum dorsal region30.9
29.93
Cd9STRvStriatum ventral region16.71
13.69
Cd9THThalamus28.93
28.51
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CD9_HUMAN_119 12 119 130 EVQEFYKDTYNK PRIDE
CD9_HUMAN_144 25 144 168 AIHYALNCCGLAGGVEQFISDICPK PRIDE
CD9_HUMAN_169 10 169 178 KDVLETFTVK PRIDE
PAp00000434 25 145 169 AIHYALNCCGLAGGVEQFISDICPK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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