Annotation Detail for REEP6
Basic Information Top
| Gene Symbol: | REEP6 ( C19orf32,DP1L1,FLJ25383,TB2L1 ) |
|---|---|
| Gene Full Name: | receptor accessory protein 6 |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:92840; OMIM: 609346; Uniprot ID:REEP6_HUMAN; ENSEMBL ID: ENSG00000115255; HGNC ID: 30078 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.76277
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 52 / 1939121 | 26 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 68 / 3360307 | 20 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 1 / 89626 | 11 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 23 / 330442 | 69 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_891_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.85 ± 0.32 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.89 ± 0.35 | |
| Basal Part of Pons | 5.51 ± 0.21 | |
| Cerebellar Cortex | 4.78 ± 0.35 | |
| Cerebellar Nuclei | 4.84 ± 0.51 | |
| Claustrum | 4.9 ± 0.64 | |
| Epithalamus | 4.71 ± 0.51 | |
| Frontal Lobe | 5.12 ± 0.47 | |
| Globus Pallidus | 4.79 ± 0.45 | |
| Hypothalamus | 4.78 ± 0.66 | |
| Insula | 4.99 ± 0.5 | |
| Limbic Lobe | 4.97 ± 0.44 | |
| Mesencephalon | 4.84 ± 0.55 | |
| Myelencephalon | 4.98 ± 0.45 | |
| Occipital Lobe | 4.97 ± 0.4 | |
| Parietal Lobe | 4.99 ± 0.43 | |
| Pontine Tegmentum | 4.84 ± 0.44 | |
| Striatum | 5.02 ± 0.44 | |
| Subthalamus | 4.78 ± 0.18 | |
| Temporal Lobe | 4.99 ± 0.46 | |
| Thalamus | 5.09 ± 0.33 | |
| White Matter | 4.25 ± 0.7 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Reep6 | CB | Cerebellum | 2.5 | |
| 2.55 | | |||
| Reep6 | CTX | Cerebral cortex | 4.23 | |
| 3.27 | | |||
| Reep6 | HIP | Hippocampal region | 6.26 | |
| 6.79 | | |||
| Reep6 | HPF | Hippocampal formation | 5.05 | |
| 5.04 | | |||
| Reep6 | HY | Hypothalamus | 0.93 | |
| 1.46 | | |||
| Reep6 | LSX | Lateral septal complex | 0.2 | |
| 0.18 | | |||
| Reep6 | MB | Midbrain | 0.66 | |
| 0.93 | | |||
| Reep6 | MY | Medulla | 2.53 | |
| 3.6 | | |||
| Reep6 | OLF | Olfactory bulb | 6.81 | |
| 5.37 | | |||
| Reep6 | P | Pons | 1.95 | |
| 2.73 | | |||
| Reep6 | PAL | Pallidum | 0.46 | |
| 0.36 | | |||
| Reep6 | RHP | Retrohippocampal region | 3.19 | |
| 2.78 | | |||
| Reep6 | sAMY | Striatum-like amygdalar nuclei | 0.68 | |
| 0.94 | | |||
| Reep6 | STR | Striatum | 1.17 | |
| 1 | | |||
| Reep6 | STRd | Striatum dorsal region | 0.45 | |
| 0.46 | | |||
| Reep6 | STRv | Striatum ventral region | 4.51 | |
| 3.19 | | |||
| Reep6 | TH | Thalamus | 0.5 | |
| 0.64 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00075528 | 13 | 16 | 28 | NLVTEVLGALEAK | Peptide Atlas |
| REEP6_HUMAN_15 | 13 | 15 | 27 | NLVTEVLGALEAK | PRIDE |