Annotation Detail for CCDC102A
Basic Information Top
| Gene Symbol: | CCDC102A ( MGC10992,MGC13119 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 102A |
| Band: | 16q21 |
| Quick Links | Entrez ID:92922; OMIM: NA; Uniprot ID:C102A_HUMAN; ENSEMBL ID: ENSG00000135736; HGNC ID: 28097 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.644611
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 1 / 564012 | 1 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 21 / 1939121 | 10 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 19 / 3360307 | 5 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 1 / 89626 | 11 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 1 / 24145 | 41 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1240_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.83 ± 1.08 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.46 ± 0.63 | |
| Basal Part of Pons | 1.22 ± 0.63 | |
| Cerebellar Cortex | 1.43 ± 0.69 | |
| Cerebellar Nuclei | 1.78 ± 0.9 | |
| Claustrum | 2.09 ± 0.74 | |
| Epithalamus | 2.28 ± 0.9 | |
| Frontal Lobe | 1.58 ± 0.72 | |
| Globus Pallidus | 2.37 ± 0.72 | |
| Hypothalamus | 1.7 ± 0.55 | |
| Insula | 1.46 ± 0.66 | |
| Limbic Lobe | 1.56 ± 0.77 | |
| Mesencephalon | 1.82 ± 0.78 | |
| Myelencephalon | 1.64 ± 0.7 | |
| Occipital Lobe | 1.61 ± 0.85 | |
| Parietal Lobe | 1.58 ± 0.8 | |
| Pontine Tegmentum | 1.81 ± 0.71 | |
| Striatum | 1.92 ± 0.82 | |
| Subthalamus | 1.41 ± 0.67 | |
| Temporal Lobe | 1.57 ± 0.78 | |
| Thalamus | 1.66 ± 0.66 | |
| White Matter | 1.87 ± 0.69 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccdc102a | CB | Cerebellum | 15.45 | |
| 19.21 | | |||
| Ccdc102a | CTX | Cerebral cortex | 24.7 | |
| 18.08 | | |||
| Ccdc102a | HIP | Hippocampal region | 11.27 | |
| 11.46 | | |||
| Ccdc102a | HPF | Hippocampal formation | 14.39 | |
| 13.17 | | |||
| Ccdc102a | HY | Hypothalamus | 7.21 | |
| 6.2 | | |||
| Ccdc102a | LSX | Lateral septal complex | 1.02 | |
| 0.71 | | |||
| Ccdc102a | MB | Midbrain | 6.25 | |
| 6.09 | | |||
| Ccdc102a | MY | Medulla | 23.86 | |
| 27.74 | | |||
| Ccdc102a | OLF | Olfactory bulb | 22.16 | |
| 16.71 | | |||
| Ccdc102a | P | Pons | 13.9 | |
| 14.99 | | |||
| Ccdc102a | PAL | Pallidum | 17.58 | |
| 16.5 | | |||
| Ccdc102a | RHP | Retrohippocampal region | 21.52 | |
| 17.02 | | |||
| Ccdc102a | sAMY | Striatum-like amygdalar nuclei | 10.39 | |
| 7.53 | | |||
| Ccdc102a | STR | Striatum | 13.48 | |
| 9.69 | | |||
| Ccdc102a | STRd | Striatum dorsal region | 14.54 | |
| 10.45 | | |||
| Ccdc102a | STRv | Striatum ventral region | 17.15 | |
| 11.95 | | |||
| Ccdc102a | TH | Thalamus | 21.67 | |
| 18.52 | |