AutismKB 2.0

Annotation Detail for ACCN3


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Basic Information Top
Gene Symbol:ACCN3 ( ASIC3,DRASIC,SLNAC1,TNaC1 )
Gene Full Name: amiloride-sensitive cation channel 3
Band: 7q35
Quick LinksEntrez ID:9311; OMIM: 611741; Uniprot ID:ACCN3_HUMAN; ENSEMBL ID: ENSG00000213199; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult12 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal34 / 336030710
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain8 / 11009897
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye3 / 21105414
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen1 / 5395218
stomach0 / 966190 
testis8 / 33044224
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207561_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.55
Adipocyte5.4
AdrenalCortex6.05
Adrenalgland4.8
Amygdala6.05
Appendix5.85
AtrioventricularNode4.75
BDCA4+_DentriticCells5.9
Bonemarrow6
BronchialEpithelialCells5.55
CD105+_Endothelial5.75
CD14+_Monocytes6
CD19+_BCells(neg._sel.)5.95
CD33+_Myeloid7.35
CD34+7.1
CD4+_Tcells6.3
CD56+_NKCells6.6
CD71+_EarlyErythroid5.55
CD8+_Tcells5.55
CardiacMyocytes7.35
Caudatenucleus5.1
Cerebellum4.6
CerebellumPeduncles6.55
CiliaryGanglion4.25
CingulateCortex5.95
Colorectaladenocarcinoma5.65
DorsalRootGanglion4.7
FetalThyroid5.55
Fetalbrain5.6
Fetalliver4.9
Fetallung4.4
GlobusPallidus4.4
Heart8.25
Hypothalamus6.05
Kidney4.75
Leukemia_chronicMyelogenousK-5626.25
Leukemia_promyelocytic-HL-605.05
Leukemialymphoblastic(MOLT-4)4.4
Liver7.5
Lung6.2
Lymphnode4.7
Lymphoma_burkitts(Daudi)7.25
Lymphoma_burkitts(Raji)8.05
MedullaOblongata5.2
OccipitalLobe5.15
OlfactoryBulb4.45
Ovary3.95
Pancreas4.65
PancreaticIslet6.05
ParietalLobe6.05
Pituitary6.65
Placenta5.75
Pons6.95
PrefrontalCortex10.7
Prostate6.55
Salivarygland4.55
SkeletalMuscle7.25
Skin4.55
SmoothMuscle6.15
Spinalcord7.6
SubthalamicNucleus5.2
SuperiorCervicalGanglion7.2
TemporalLobe5.25
Testis4.9
TestisGermCell5.25
TestisIntersitial4.8
TestisLeydigCell7.05
TestisSeminiferousTubule5
Thalamus5.75
Thymus4.2
Thyroid6.85
Tongue5.5
Tonsil5.55
Trachea4.75
TrigeminalGanglion6.1
Uterus4.45
UterusCorpus5.95
WholeBlood5.95
Wholebrain4.7
colon5.75
pineal_day8.74
pineal_night7.04
retina7.075
small_intestine5.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8962_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.87 ± 1.26
Basal Forebrain7.14 ± 0.6
Basal Part of Pons6.36 ± 0.38
Cerebellar Cortex6.12 ± 0.66
Cerebellar Nuclei7.09 ± 0.52
Claustrum7.35 ± 0.9
Epithalamus5.51 ± 0.88
Frontal Lobe6.69 ± 0.92
Globus Pallidus7.24 ± 0.62
Hypothalamus6.52 ± 0.85
Insula6.29 ± 0.9
Limbic Lobe6.64 ± 0.89
Mesencephalon6.98 ± 0.84
Myelencephalon6.77 ± 0.91
Occipital Lobe6.89 ± 0.93
Parietal Lobe6.68 ± 0.93
Pontine Tegmentum6.61 ± 0.69
Striatum7.09 ± 0.85
Subthalamus7.36 ± 0.53
Temporal Lobe6.52 ± 0.92
Thalamus6.97 ± 0.85
White Matter6.24 ± 0.39
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Accn3STRdStriatum dorsal region1.97
0.88
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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