Annotation Detail for TRIP13
Basic Information Top
| Gene Symbol: | TRIP13 ( 16E1BP ) |
|---|---|
| Gene Full Name: | thyroid hormone receptor interactor 13 |
| Band: | 5p15.33 |
| Quick Links | Entrez ID:9319; OMIM: 604507; Uniprot ID:TRP13_HUMAN; ENSEMBL ID: ENSG00000071539; HGNC ID: 12307 |
| Relate to Another Database: | SFARIGene; denovo-db |
Unigene EST- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204033_at
| Cell line | Expression level | Expression bar |
|---|---|---|
 | ||
| 721_B_lymphoblasts | 121.75 |  |
| Adipocyte | 9.15 |  |
| AdrenalCortex | 10.65 |  |
| Adrenalgland | 7.6 | |
| Amygdala | 9.8 | |
| Appendix | 10.2 | |
| AtrioventricularNode | 7.8 | |
| BDCA4+_DentriticCells | 10.55 | |
| Bonemarrow | 18.85 | |
| BronchialEpithelialCells | 39.5 | |
| CD105+_Endothelial | 82.8 | |
| CD14+_Monocytes | 9.7 | |
| CD19+_BCells(neg._sel.) | 9.6 | |
| CD33+_Myeloid | 11.8 | |
| CD34+ | 64.35 | |
| CD4+_Tcells | 9.25 | |
| CD56+_NKCells | 10.2 | |
| CD71+_EarlyErythroid | 77.7 | |
| CD8+_Tcells | 8.3 | |
| CardiacMyocytes | 96.85 | |
| Caudatenucleus | 7.8 | |
| Cerebellum | 7.3 | |
| CerebellumPeduncles | 10.3 | |
| CiliaryGanglion | 6.45 | |
| CingulateCortex | 9.85 | |
| Colorectaladenocarcinoma | 66.8 | |
| DorsalRootGanglion | 9.1 | |
| FetalThyroid | 8.95 | |
| Fetalbrain | 15.9 | |
| Fetalliver | 19.1 | |
| Fetallung | 9.05 | |
| GlobusPallidus | 6.7 | |
| Heart | 12.3 | |
| Hypothalamus | 9.4 | |
| Kidney | 7.5 | |
| Leukemia_chronicMyelogenousK-562 | 95.35 | |
| Leukemia_promyelocytic-HL-60 | 57.25 | |
| Leukemialymphoblastic(MOLT-4) | 62.9 | |
| Liver | 11.9 | |
| Lung | 10.3 | |
| Lymphnode | 7.9 | |
| Lymphoma_burkitts(Daudi) | 145.75 | |
| Lymphoma_burkitts(Raji) | 13.5 | |
| MedullaOblongata | 7.7 | |
| OccipitalLobe | 7.55 | |
| OlfactoryBulb | 7.3 | |
| Ovary | 6.25 | |
| Pancreas | 7.4 | |
| PancreaticIslet | 10.1 | |
| ParietalLobe | 9.65 | |
| Pituitary | 11.8 | |
| Placenta | 8.85 | |
| Pons | 8.85 | |
| PrefrontalCortex | 11.55 | |
| Prostate | 10.25 | |
| Salivarygland | 7.25 | |
| SkeletalMuscle | 15.3 | |
| Skin | 7.8 | |
| SmoothMuscle | 16.55 | |
| Spinalcord | 9.95 | |
| SubthalamicNucleus | 8.25 | |
| SuperiorCervicalGanglion | 17.05 | |
| TemporalLobe | 8.55 | |
| Testis | 136.6 | |
| TestisGermCell | 43.5 | |
| TestisIntersitial | 55.2 | |
| TestisLeydigCell | 49.05 | |
| TestisSeminiferousTubule | 50.7 | |
| Thalamus | 8.75 | |
| Thymus | 12.3 | |
| Thyroid | 11.5 | |
| Tongue | 18.05 | |
| Tonsil | 10.1 | |
| Trachea | 7.8 | |
| TrigeminalGanglion | 13.7 | |
| Uterus | 7.65 | |
| UterusCorpus | 8.55 | |
| WholeBlood | 11.6 | |
| Wholebrain | 9.1 | |
| colon | 9.25 | |
| pineal_day | 10.16 | |
| pineal_night | 9.6 | |
| retina | 10.75 | |
| small_intestine | 10.65 | |
- Probe name: CUST_1418_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.11 ± 0.93 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.44 ± 0.21 | |
| Basal Part of Pons | 1.32 ± 0.52 | |
| Cerebellar Cortex | 1.49 ± 0.78 | |
| Cerebellar Nuclei | 1.81 ± 0.73 | |
| Claustrum | 2.24 ± 0.72 | |
| Epithalamus | 1.12 ± 0.79 | |
| Frontal Lobe | 1.46 ± 0.7 | |
| Globus Pallidus | 1.87 ± 0.52 | |
| Hypothalamus | 1.73 ± 0.54 | |
| Insula | 1.13 ± 0.4 | |
| Limbic Lobe | 1.55 ± 0.64 | |
| Mesencephalon | 1.73 ± 0.88 | |
| Myelencephalon | 1.61 ± 0.67 | |
| Occipital Lobe | 1.69 ± 0.8 | |
| Parietal Lobe | 1.52 ± 0.74 | |
| Pontine Tegmentum | 1.52 ± 0.57 | |
| Striatum | 1.54 ± 0.62 | |
| Subthalamus | 1.66 ± 0.72 | |
| Temporal Lobe | 1.54 ± 0.73 | |
| Thalamus | 1.45 ± 0.67 | |
| White Matter | 1.64 ± 0.31 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Trip13 | CB | Cerebellum | 1.34 | |
| 2.25 | | |||
| Trip13 | CTX | Cerebral cortex | 0.49 | |
| 0.64 | | |||
| Trip13 | HIP | Hippocampal region | 0.3 | |
| 0.56 | | |||
| Trip13 | HPF | Hippocampal formation | 0.32 | |
| 0.55 | | |||
| Trip13 | HY | Hypothalamus | 0.27 | |
| 0.3 | | |||
| Trip13 | LSX | Lateral septal complex | 0.23 | |
| 0.29 | | |||
| Trip13 | MB | Midbrain | 0.27 | |
| 0.33 | | |||
| Trip13 | MY | Medulla | 0.49 | |
| 0.73 | | |||
| Trip13 | OLF | Olfactory bulb | 1.1 | |
| 3.13 | | |||
| Trip13 | P | Pons | 0.22 | |
| 0.24 | | |||
| Trip13 | PAL | Pallidum | 0.35 | |
| 0.37 | | |||
| Trip13 | RHP | Retrohippocampal region | 0.36 | |
| 0.53 | | |||
| Trip13 | sAMY | Striatum-like amygdalar nuclei | 0.53 | |
| 0.64 | | |||
| Trip13 | STR | Striatum | 0.23 | |
| 0.39 | | |||
| Trip13 | STRd | Striatum dorsal region | 0.24 | |
| 0.5 | | |||
| Trip13 | STRv | Striatum ventral region | 0.17 | |
| 0.16 | | |||
| Trip13 | TH | Thalamus | 0.52 | |
| 0.97 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00006650 | 16 | 289 | 304 | RHSNVVILTTSNITEK | Peptide Atlas |
| TRP13_HUMAN_368 | 10 | 368 | 377 | LSLLLNDISR | PRIDE |