AutismKB 2.0

Annotation Detail for ZNHIT3


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Basic Information Top
Gene Symbol:ZNHIT3 ( TRIP3 )
Gene Full Name: zinc finger, HIT-type containing 3
Band: 17q12
Quick LinksEntrez ID:9326; OMIM: 604500; Uniprot ID:ZNHI3_HUMAN; ENSEMBL ID: ENSG00000108278; HGNC ID: 12309
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus71 / 564012125
neonate3 / 3109796
infant0 / 236200 
juvenile2 / 5555635
adult103 / 193912153
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma3 / 17475171
breast (mammary gland) tumor3 / 9417831
cervical tumor2 / 3436658
chondrosarcoma9 / 82823108
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor11 / 26384541
glioma8 / 10688374
head and neck tumor11 / 13630280
kidney tumor2 / 6895929
leukemia7 / 9584273
liver tumor5 / 9635951
lung tumor5 / 10312748
lymphoma5 / 7175569
non-neoplasia2 / 9725020
normal247 / 336030773
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer2 / 10268019
retinoblastoma3 / 4635664
skin tumor8 / 12494964
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites4 / 4001599
bladder3 / 29757100
blood7 / 12347856
bone8 / 71655111
bone marrow0 / 488010 
brain37 / 110098933
cervix2 / 4817141
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue11 / 21572250
esophagus1 / 2020949
eye20 / 21105494
heart14 / 89626156
intestine6 / 23447225
kidney8 / 21177737
larynx0 / 241450 
liver14 / 20774367
lung37 / 336974109
lymph2 / 4427045
lymph node13 / 91610141
mammary gland7 / 15327145
mouth0 / 670520 
muscle2 / 10771518
nerve1 / 1576863
ovary1 / 1020519
pancreas18 / 21481283
parathyroid3 / 20539146
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta24 / 28082585
prostate6 / 18934531
salivary gland8 / 20155396
skin13 / 21057461
spleen1 / 5395218
stomach6 / 9661962
testis28 / 33044284
thymus1 / 8113112
thyroid3 / 4747363
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord2 / 13680146
uterus9 / 23287838
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212544_at
Cell line Expression level Expression bar
721_B_lymphoblasts232.65
Adipocyte13
AdrenalCortex12.75
Adrenalgland8.05
Amygdala56.85
Appendix8.05
AtrioventricularNode7
BDCA4+_DentriticCells70.6
Bonemarrow8.7
BronchialEpithelialCells164.45
CD105+_Endothelial43.2
CD14+_Monocytes80.2
CD19+_BCells(neg._sel.)212.45
CD33+_Myeloid24.25
CD34+77.45
CD4+_Tcells99.8
CD56+_NKCells69.8
CD71+_EarlyErythroid16.3
CD8+_Tcells108.3
CardiacMyocytes20.85
Caudatenucleus14.65
Cerebellum8.5
CerebellumPeduncles24.4
CiliaryGanglion6.45
CingulateCortex34.2
Colorectaladenocarcinoma32.8
DorsalRootGanglion7.05
FetalThyroid15.7
Fetalbrain43
Fetalliver8.55
Fetallung11.55
GlobusPallidus9.2
Heart10.6
Hypothalamus98.45
Kidney6.25
Leukemia_chronicMyelogenousK-56277.75
Leukemia_promyelocytic-HL-6047.9
Leukemialymphoblastic(MOLT-4)147.6
Liver12.35
Lung11.2
Lymphnode16.8
Lymphoma_burkitts(Daudi)114.6
Lymphoma_burkitts(Raji)36.4
MedullaOblongata23.6
OccipitalLobe47.05
OlfactoryBulb12
Ovary6.35
Pancreas10.4
PancreaticIslet21.4
ParietalLobe18.1
Pituitary15.4
Placenta8.35
Pons21.55
PrefrontalCortex45.15
Prostate16.05
Salivarygland11.85
SkeletalMuscle10
Skin7.25
SmoothMuscle38.2
Spinalcord30.85
SubthalamicNucleus12.3
SuperiorCervicalGanglion9.1
TemporalLobe31.3
Testis57.3
TestisGermCell55.9
TestisIntersitial97.95
TestisLeydigCell29.15
TestisSeminiferousTubule34.35
Thalamus38.45
Thymus17.3
Thyroid19.45
Tongue9.4
Tonsil14.15
Trachea9.7
TrigeminalGanglion9.55
Uterus15.85
UterusCorpus11.85
WholeBlood37.95
Wholebrain90.65
colon14.2
pineal_day28.62
pineal_night33.64
retina16.775
small_intestine11.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_13504_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.45 ± 0.42
Basal Forebrain6.4 ± 0.33
Basal Part of Pons6.77 ± 0.35
Cerebellar Cortex6.63 ± 0.36
Cerebellar Nuclei6.55 ± 0.71
Claustrum5.89 ± 0.75
Epithalamus6.23 ± 0.36
Frontal Lobe6.67 ± 0.42
Globus Pallidus5.99 ± 0.38
Hypothalamus6.84 ± 0.36
Insula6.71 ± 0.41
Limbic Lobe6.31 ± 0.66
Mesencephalon6.27 ± 0.55
Myelencephalon6.3 ± 0.6
Occipital Lobe5.7 ± 0.66
Parietal Lobe6.4 ± 0.44
Pontine Tegmentum6.4 ± 0.5
Striatum5.67 ± 0.49
Subthalamus5.9 ± 0.79
Temporal Lobe6.61 ± 0.43
Thalamus6.22 ± 0.4
White Matter6 ± 0.53
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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