AutismKB 2.0

Annotation Detail for CD163


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Basic Information Top
Gene Symbol:CD163 ( M130,MM130 )
Gene Full Name: CD163 molecule
Band: 12p13.31
Quick LinksEntrez ID:9332; OMIM: 605545; Uniprot ID:C163A_HUMAN; ENSEMBL ID: ENSG00000177575; HGNC ID: 1631
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus18 / 56401231
neonate5 / 31097160
infant0 / 236200 
juvenile1 / 5555617
adult141 / 193912172
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor6 / 26384522
glioma7 / 10688365
head and neck tumor7 / 13630251
kidney tumor26 / 68959377
leukemia5 / 9584252
liver tumor1 / 9635910
lung tumor6 / 10312758
lymphoma0 / 717550 
non-neoplasia100 / 972501028
normal135 / 336030740
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder1 / 2975733
blood8 / 12347864
bone1 / 7165513
bone marrow0 / 488010 
brain22 / 110098919
cervix0 / 481710 
connective tissue114 / 149255763
ear1 / 1621261
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye4 / 21105418
heart2 / 8962622
intestine4 / 23447217
kidney29 / 211777136
larynx2 / 2414582
liver2 / 2077439
lung17 / 33697450
lymph0 / 442700 
lymph node0 / 916100 
mammary gland6 / 15327139
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta52 / 280825185
prostate1 / 1893455
salivary gland0 / 201550 
skin1 / 2105744
spleen8 / 53952148
stomach3 / 9661931
testis14 / 33044242
thymus7 / 8113186
thyroid6 / 47473126
tonsil0 / 169990 
trachea19 / 52413362
umbilical cord0 / 136800 
uterus21 / 23287890
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215049_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.95
Adipocyte5.15
AdrenalCortex7.7
Adrenalgland27.1
Amygdala4.15
Appendix5.55
AtrioventricularNode3.4
BDCA4+_DentriticCells121
Bonemarrow36.55
BronchialEpithelialCells3.85
CD105+_Endothelial96.8
CD14+_Monocytes600.3
CD19+_BCells(neg._sel.)4.25
CD33+_Myeloid857.35
CD34+5.15
CD4+_Tcells4.25
CD56+_NKCells4.8
CD71+_EarlyErythroid3.7
CD8+_Tcells3.8
CardiacMyocytes4.8
Caudatenucleus3.55
Cerebellum3.2
CerebellumPeduncles4.4
CiliaryGanglion2.8
CingulateCortex4
Colorectaladenocarcinoma3.9
DorsalRootGanglion3.8
FetalThyroid4.1
Fetalbrain3.9
Fetalliver28.6
Fetallung224.25
GlobusPallidus2.85
Heart4.95
Hypothalamus4.45
Kidney3.15
Leukemia_chronicMyelogenousK-5623.55
Leukemia_promyelocytic-HL-603.4
Leukemialymphoblastic(MOLT-4)3.15
Liver5.2
Lung109.8
Lymphnode49.65
Lymphoma_burkitts(Daudi)5
Lymphoma_burkitts(Raji)5.4
MedullaOblongata3.6
OccipitalLobe3.55
OlfactoryBulb29.55
Ovary74.85
Pancreas4.6
PancreaticIslet45.8
ParietalLobe4.05
Pituitary6.5
Placenta84.6
Pons3.7
PrefrontalCortex4.95
Prostate4.6
Salivarygland4.65
SkeletalMuscle4.5
Skin3
SmoothMuscle4.45
Spinalcord4.3
SubthalamicNucleus3.55
SuperiorCervicalGanglion4.35
TemporalLobe3.6
Testis3.4
TestisGermCell3.3
TestisIntersitial3.3
TestisLeydigCell3.9
TestisSeminiferousTubule3.4
Thalamus4
Thymus5.25
Thyroid4.9
Tongue3.8
Tonsil3.8
Trachea3.65
TrigeminalGanglion3.9
Uterus3.35
UterusCorpus3.45
WholeBlood26.05
Wholebrain3.3
colon3.95
pineal_day5.9
pineal_night4.84
retina20.325
small_intestine4.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14782_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.16 ± 1.19
Basal Forebrain2.23 ± 0.52
Basal Part of Pons1.6 ± 0.64
Cerebellar Cortex1.53 ± 0.78
Cerebellar Nuclei2.54 ± 0.95
Claustrum2.36 ± 0.91
Epithalamus1.93 ± 1
Frontal Lobe1.67 ± 0.86
Globus Pallidus3.02 ± 0.56
Hypothalamus1.87 ± 0.82
Insula1.95 ± 0.73
Limbic Lobe1.82 ± 0.96
Mesencephalon1.98 ± 0.79
Myelencephalon1.85 ± 0.72
Occipital Lobe1.65 ± 0.77
Parietal Lobe1.76 ± 0.8
Pontine Tegmentum1.93 ± 0.94
Striatum2.45 ± 0.66
Subthalamus1.96 ± 0.61
Temporal Lobe1.75 ± 0.9
Thalamus1.86 ± 0.72
White Matter2.13 ± 0.57
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cd163CBCerebellum0.61
0.84
Cd163CTXCerebral cortex0.84
0.59
Cd163HIPHippocampal region0.69
0.82
Cd163HPFHippocampal formation0.64
0.66
Cd163HYHypothalamus0.31
0.2
Cd163LSXLateral septal complex0.08
0.05
Cd163MBMidbrain0.51
0.44
Cd163MYMedulla0.41
0.43
Cd163OLFOlfactory bulb1.25
0.84
Cd163PPons0.64
0.35
Cd163PALPallidum0.38
0.16
Cd163RHPRetrohippocampal region0.57
0.45
Cd163sAMYStriatum-like amygdalar nuclei0.5
0.27
Cd163STRStriatum0.39
0.32
Cd163STRdStriatum dorsal region0.35
0.3
Cd163STRvStriatum ventral region0.53
0.44
Cd163THThalamus0.51
0.34
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00064401 11 382 392 CAGTVEVEIQR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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