AutismKB 2.0

Annotation Detail for SNAP29


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Basic Information Top
Gene Symbol:SNAP29 ( CEDNIK,FLJ21051,SNAP-29 )
Gene Full Name: synaptosomal-associated protein, 29kDa
Band: 22q11.21
Quick LinksEntrez ID:9342; OMIM: 604202; Uniprot ID:SNP29_HUMAN; ENSEMBL ID: ENSG00000099940; HGNC ID: 11133
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst2 / 6231932
fetus20 / 56401235
neonate2 / 3109764
infant1 / 2362042
juvenile3 / 5555653
adult83 / 193912142
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor13 / 94178138
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor11 / 26384541
glioma13 / 106883121
head and neck tumor3 / 13630222
kidney tumor1 / 6895914
leukemia6 / 9584262
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma3 / 7175541
non-neoplasia1 / 9725010
normal131 / 336030738
ovarian tumor2 / 7668226
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer2 / 10268019
retinoblastoma4 / 4635686
skin tumor2 / 12494916
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites2 / 4001549
bladder1 / 2975733
blood5 / 12347840
bone4 / 7165555
bone marrow1 / 4880120
brain50 / 110098945
cervix7 / 48171145
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye16 / 21105475
heart2 / 8962622
intestine6 / 23447225
kidney9 / 21177742
larynx0 / 241450 
liver3 / 20774314
lung8 / 33697423
lymph2 / 4427045
lymph node6 / 9161065
mammary gland14 / 15327191
mouth2 / 6705229
muscle5 / 10771546
nerve0 / 157680 
ovary4 / 10205139
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta18 / 28082564
prostate6 / 18934531
salivary gland0 / 201550 
skin4 / 21057418
spleen1 / 5395218
stomach0 / 966190 
testis17 / 33044251
thymus7 / 8113186
thyroid2 / 4747342
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus23 / 23287898
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218327_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts159.5
Adipocyte42.5
AdrenalCortex13.6
Adrenalgland34.85
Amygdala17.85
Appendix14.35
AtrioventricularNode14.3
BDCA4+_DentriticCells172.3
Bonemarrow23.7
BronchialEpithelialCells70.3
CD105+_Endothelial110.95
CD14+_Monocytes177.7
CD19+_BCells(neg._sel.)66.35
CD33+_Myeloid138.2
CD34+125.1
CD4+_Tcells38.65
CD56+_NKCells187.25
CD71+_EarlyErythroid186.05
CD8+_Tcells40.25
CardiacMyocytes27.15
Caudatenucleus17.2
Cerebellum19.75
CerebellumPeduncles28.9
CiliaryGanglion16.85
CingulateCortex14.15
Colorectaladenocarcinoma18.8
DorsalRootGanglion10.55
FetalThyroid26.5
Fetalbrain20.65
Fetalliver33.05
Fetallung26.95
GlobusPallidus21.9
Heart34.05
Hypothalamus18.55
Kidney32.65
Leukemia_chronicMyelogenousK-562205.1
Leukemia_promyelocytic-HL-6040.95
Leukemialymphoblastic(MOLT-4)79.4
Liver93.75
Lung73.7
Lymphnode33.7
Lymphoma_burkitts(Daudi)67.6
Lymphoma_burkitts(Raji)59.7
MedullaOblongata15.25
OccipitalLobe19.35
OlfactoryBulb16.65
Ovary9.9
Pancreas16.75
PancreaticIslet32.1
ParietalLobe40.8
Pituitary31.6
Placenta92.6
Pons19.65
PrefrontalCortex14.8
Prostate44.95
Salivarygland22.15
SkeletalMuscle28.7
Skin14.3
SmoothMuscle64.5
Spinalcord30
SubthalamicNucleus12.65
SuperiorCervicalGanglion12.15
TemporalLobe16.8
Testis131.55
TestisGermCell100.85
TestisIntersitial246.55
TestisLeydigCell156.5
TestisSeminiferousTubule159.95
Thalamus29.5
Thymus56.05
Thyroid27.65
Tongue39.95
Tonsil35.5
Trachea30.5
TrigeminalGanglion12.7
Uterus19.1
UterusCorpus18.9
WholeBlood56.7
Wholebrain34.85
colon20.55
pineal_day81.66
pineal_night113.32
retina28.8
small_intestine15.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P29141
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.3 ± 0.51
Basal Forebrain5.36 ± 0.53
Basal Part of Pons5.07 ± 0.29
Cerebellar Cortex5.03 ± 0.41
Cerebellar Nuclei5.12 ± 0.35
Claustrum5.36 ± 0.34
Epithalamus5.1 ± 0.28
Frontal Lobe5.23 ± 0.4
Globus Pallidus5.57 ± 0.36
Hypothalamus5.15 ± 0.5
Insula5.18 ± 0.4
Limbic Lobe5.24 ± 0.4
Mesencephalon5.16 ± 0.41
Myelencephalon5.21 ± 0.44
Occipital Lobe4.88 ± 0.39
Parietal Lobe5.1 ± 0.39
Pontine Tegmentum5.25 ± 0.39
Striatum5.03 ± 0.35
Subthalamus5.05 ± 0.55
Temporal Lobe5.24 ± 0.41
Thalamus5.17 ± 0.39
White Matter5.66 ± 0.23
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Snap29CBCerebellum24
45.08
Snap29CTXCerebral cortex45.61
39.42
Snap29HIPHippocampal region36.9
53.07
Snap29HPFHippocampal formation34.13
42.41
Snap29HYHypothalamus10.44
9.43
Snap29LSXLateral septal complex8.68
6.55
Snap29MBMidbrain17.26
18.07
Snap29MYMedulla20.36
26.7
Snap29OLFOlfactory bulb28.71
26.71
Snap29PPons21.71
27.58
Snap29PALPallidum7.85
8.04
Snap29RHPRetrohippocampal region30.95
29.96
Snap29sAMYStriatum-like amygdalar nuclei7.99
6.38
Snap29STRStriatum6.82
6.02
Snap29STRdStriatum dorsal region5.51
5.25
Snap29STRvStriatum ventral region10.14
8.01
Snap29THThalamus19.67
18.34
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00070102 14 202 215 IDSNLDELSMGLGR Peptide Atlas
SNP29_HUMAN_113 11 113 123 SVFGGLVNYFK PRIDE
SNP29_HUMAN_2 20 2 21 SAYPKSYNPFDDDGEDEGAR PRIDE
SNP29_HUMAN_216 21 216 236 LKDIALGMQTEIEEQDDILDR PRIDE
SNP29_HUMAN_29 12 29 40 DLPDGPDAPADR PRIDE
SNP29_HUMAN_53 10 53 62 AEATAASTSR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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